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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTCCTCAGACACCTCCTTGAGTGATTCAATGGAGGCATCAACAAGTGTGCTTGCAGAGGGCGGGCCACTGTTGGTGAACATCGCCAGAACAACAGAAgtaagagaaaccccttgtggttattatgctgcaataacgttttcagaaaaaaaaaacgctttggtttgagttttcaatctcttgttgtggtttgcagcag

Basic information

species Zea mays
transcript GRMZM2G340359_T01
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60358558|gb|DN225531.1|DN225531
EST:     TGCTTGCAGAGGGCGGGCCACTGTTGGTGAACATCGCCAGAACAACAGAACA                        
genomic: TGCTTGCAGAGGGCGGGCCACTGTTGGTGAACATCGCCAGAACAACAG-A-Agtaagagaaa ... tttgcagca
EST: gi|60358558|gb|DN225531.1|DN225531
EST:     TGCTTGCAGAGGGCGGGCCACTGTTGGTGAACATCGCCAGAACAACAGAACA                        
genomic: TGCTTGCAGAGGGCGGGCCACTGTTGGTGAACATCGCCAGAACAACAG-A-Agtaagagaaa ... tttgcagca
EST: gi|93012875|gb|EB638395.1|EB638395
EST:     TGCTTGCAGAGGGCGGGCCACTGTTGGTGAACATCGCCAGACCAACAGAA                         GGTGTTGAATACGGGAGACCTCCGACTGTGCCGTCATCTACTCTAGTTGAA
genomic: TGCTTGCAGAGGGCGGGCCACTGTTGGTGAACATCGCCAGAACAACAGAAgtaagagaaa ... tttgcagcagGGTGTTGAATACGGGAGACCTCCGACTGTGCCGTCATCTACTCTAGTTGAA