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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTTGCTGTTCTATGCTTAGCAGCTGGTGACCAGAAGTGTGCATCTACAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctgctcctgagaggatatgtttactcattttcatctgtgccatgtctctaccctttgatgtaatcttatcagtgttttaaaagtggttcatgg...

Basic information

species Zea mays
transcript GRMZM2G168629_T05
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T01 (Zea mays), 5'ss of exon 21
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 21
GTGTGTTGCTGTTCTATGCTTAGCAGCTGGTGACCAGAAGTGTGCATCTACAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctgctcctgagaggatatgtttactcattttcatctgtgccatgtctctaccctttgatg--taatcttatcagtgttttaaaagtggttcatgg
||||||||||||  | |||||||||||||| || ||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |    || |||    | |||| |  |  ||  | ||||| |  | || ||    | |  |   |   ||  |  || |  |  | |   |   | |
GTGTGTTGCTGTGTTGTGCTTAGCAGCTGGGGATCAGAAGTGTGCCTCAACTATTGAAATGCTTAAAGGCATTTTAAAAGATGACAGCACTACTAATTCTgtaaggcgcattcttgatgacagatgtgttgt--ttaacttctgtactgtttcacttttatgtagtacttctgctctttggtatagtgcatgccatatcttg

upper sequence: GRMZM2G168629_T01 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 22
GTGTGTTGCTGTTCTATGCTTAGCAGCTGGTGACCAGAAGTGTGCATCTACAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctgctcctgagaggatatgtt---tactcattttcatctgtgccatgtctctaccctttgatgtaatcttatcagtgttttaaaagtggttcatgg
||||||||||||||||||| | || |||||||| ||||||||| |||||||| |  ||||||| |  | |||| | || || ||||||| | ||||||| |||||   | ||| | ||    | ||||   || | | ||| ||   |      ||||     ||   | |      |   |     |     |  ||||   
GTGTGTTGCTGTTCTATGCCTTGCTGCTGGTGATCAGAAGTGTTCATCTACAGTGAAAATGCTCACTGACATTCTCAAGGATGACAGCAGTTCTAACTCCgtaagcttttctcttcagtatttctgttgtgtagtgaatttaattgataatccatctcagtatttaactatttatgcagttgcagcctgctc-taattcaa--

upper sequence: GRMZM2G168629_T01 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 21
GTGTGTTGCTGTTCTATGCTTAGCAGCTGGTGACCAGAAGTGTGCATCTACAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctgctcctgagaggatatgtt---tactcattttcatctgtg--ccat--gtctctaccctttgatgtaatcttatcagtgttttaaaagtggttcatgg
||||||||||||||||||| | || |||||||| ||||||||| |||||||  |  |||||||||  | |||| | || || ||||||| | ||||||| ||||||  |  ||   ||    | ||     || | | ||| ||       ||||  || | || |  || ||| | |   | |    ||  |  | |         
GTGTGTTGCTGTTCTATGCCTTGCTGCTGGTGATCAGAAGTGTTCATCTACTGTGAAAATGCTTACTGACATTCTCAAGGATGACAGCAGTTCTAACTCAgtaagtttttttctccagtacttctgccgtgtagtgaatttaattgacaatccatctgtgtttaactatttatgcagttacagcctaattcaatcaatct-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14191174|gb|BG833404.1|BG833404
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTGCTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|14191175|gb|BG833405.1|BG833405
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTGCTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|91877710|gb|EB407667.1|EB407667
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|211482093|gb|FL282810.1|FL282810
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|67019143|gb|CO447892.1|CO447892
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|31354241|gb|CD438598.1|CD438598
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|78119497|gb|DV537881.1|DV537881
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|71448044|gb|DR829094.1|DR829094
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
EST: gi|31364294|gb|CD448649.1|CD448649
EST:     CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCT                         GCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG
genomic: CAATTGAAATGCTTAAAGGCATTTTGAAAGACGACAGCACTACTAACTCTgtaagtcctg ... ttcatctcagGCTAAACAACACATGGCCTTATTATGTCTGGGAGAAATTGGGAGGAGGAAG