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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAGgtgcttatgaaagttttttacttgttcttcaatatgaataatctgaatgtgtggtgtggcctgtctgatctatcatctatcaggtttagtggtagttgca...

Basic information

species Zea mays
transcript GRMZM2G158043_T02
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158043_T03 (Zea mays), 5'ss of exon 21
lower sequence: LOC_Os04g08270.1 (Oryza sativa), 5'ss of exon 12
ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAGgtgcttatgaaagttttt--tacttgttcttca---atatgaataatctgaatgtgtggtgtggcctgtctgatctatcatctatcaggtttagtggtagttgca
|| || || | ||| || ||||| |||  ||||||||||||||||||| |  | |||||||| ||||||||||||||   ||  |  |  |    ||||    ||| |      || ||| |  ||   |   || |     |  ||   |   |   || |  || |     |||    
ACCCCAATTGGCCTATCGATTGATGAGAAATGCAGGATAAATCATTTGGCTTCTAGCATGATCGCATTATCCCAGgtctgtacaagtgcatacagtactatcactttataggagtggatagtgagagaat-cagtttcaaaagcatgggttgctaaaaataaaattaaa-aacagta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18648749|gb|BM497568.1|BM497568
EST:     AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAG                         GGAATACCATTTTTTCATGCTG
genomic: AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAGgtgcttatga ... gtacttccagGGAATACCATTTTTTCATGCTG
EST: gi|32852337|gb|CD992018.1|CD992018
EST:     AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAG                         GGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGCTT
genomic: AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAGgtgcttatga ... gtacttccagGGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGCTT
EST: gi|18450794|gb|BM429072.1|BM429072
EST:     AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAG                         GGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGC
genomic: AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAGgtgcttatga ... gtacttccagGGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGC
EST: gi|87152540|gb|DY397329.1|DY397329
EST:     AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAG                         GGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGC
genomic: AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAGgtgcttatga ... gtacttccagGGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGC
EST: gi|18648748|gb|BM497567.1|BM497567
EST:     AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAG                         GGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGC
genomic: AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAGgtgcttatga ... gtacttccagGGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGC
EST: gi|60396203|gb|DN229072.1|DN229072
EST:     AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAG                         GGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGCTT
genomic: AGCGATGCAGGATAAATCATTTGTCCACAAGCATGATTGCATTATCCCAGgtgcttatga ... gtacttccagGGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGCTT