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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttcatccttcattttaatacgattaaggctcttttatttatttcttgttaagcctttttttgtttgcag

Basic information

species Zea mays
transcript GRMZM2G151905_T03
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151905_T05 (Zea mays), 5'ss of exon 21
lower sequence: LOC_Os07g49260.1 (Oryza sativa), 5'ss of exon 21
TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttcatccttc-attttaatacgattaaggctcttttatttattt--cttgttaagcctttttttgtttgcag-------------------------
||||||||||||||| || || ||  |||||||||| |||||||| || |||||||||| || | | || |||| ||||| ||| ||||  |||| ||    ||  ||   |  ||||| | | | |   || ||                          
TGTCTGCACTACTGTTATCATGGGGGGCCGTGAAGTGAAGACTGAGGATGATACTAGgtgtcatattattcttccattttgatatgattttggctattgcgcttccttaaatctttaaggcctatatcagtttcatttattgttgatacaatgatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76015952|gb|DT943122.1|DT943122
EST:     ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG                         CGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
genomic: ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttc ... ttgtttgcagCGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
EST: gi|37361410|gb|CF602699.1|CF602699
EST:     ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG                         CGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
genomic: ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttc ... ttgtttgcagCGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
EST: gi|6020477|gb|AW065405.1|AW065405
EST:     ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG                         CGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
genomic: ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttc ... ttgtttgcagCGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
EST: gi|211283755|gb|FL354685.1|FL354685
EST:     ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG                         CGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTACTC
genomic: ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttc ... ttgtttgcagCGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
EST: gi|32837283|gb|CD976961.1|CD976961
EST:     ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG                         CGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
genomic: ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttc ... ttgtttgcagCGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
EST: gi|32839265|gb|CD978946.1|CD978946
EST:     ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG                         CGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
genomic: ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttc ... ttgtttgcagCGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
EST: gi|5739723|gb|AI947299.1|AI947299
EST:     CCGTGAAGTAAAGACTGATGACGATACTAG                         CGGCGATATC-CAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
genomic: CCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttc ... ttgtttgcagCGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
EST: gi|60342170|gb|DN209143.1|DN209143
EST:     ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG                         CGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
genomic: ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttc ... ttgtttgcagCGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
EST: gi|32837702|gb|CD977380.1|CD977380
EST:     ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAG                         CGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC
genomic: ACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGATACTAGgtatcctttc ... ttgtttgcagCGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTC