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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACGTGCTTATGAGCCATCTGTTGACGAAGCAAGTGTTCAAACTCTCATCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcccttttgtgatgtgttccgcataaacaattttaagattcttaactttcgggaagttggtgattgcctatctgttcccattcttgtcccctgattccgatgttatcagtcatctttgcaacgttcttatctttttctggtgtgacacttgtttcggtgtgtactag

Basic information

species Zea mays
transcript GRMZM2G107696_T02
intron # 21
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116817395|gb|EC860237.1|EC860237
EST:     TCTCCTTTGGATTCCAGGAAGGCATTGCCATAAAGGCCCTGAAAGCTTCT                         AGTGGTAATATCGAGAAAGCTACAGACTGGATATTCAGCCAACCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|4688518|gb|AI637188.1|AI637188
EST:     TNTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|211494928|gb|FL217185.1|FL217185
EST:     TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         AGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAACA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|116819768|gb|EC862916.1|EC862916
EST:     TCTCCTTTGGATTCCAGGAAGGCATTGCCATAAAGGCCCTGAAAGCTTCT                         AGTGGTAATATAGAGAAAGCT-CAGACTGGATTTTC
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTC
EST: gi|14244301|gb|BG842323.2|BG842323
EST:     TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|149014867|gb|EE044578.2|EE044578
EST:     TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|60345352|gb|DN212325.1|DN212325
EST:     TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|60339263|gb|DN206236.1|DN206236
EST:     TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|101383461|gb|EB813786.1|EB813786
EST:     TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|71595705|gb|DR906456.1|DR906456
EST:     TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|60349614|gb|DN216587.1|DN216587
EST:     GATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: GATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|60350109|gb|DN217082.1|DN217082
EST:     TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|50331230|gb|CO526356.1|CO526356
EST:     TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTTT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
EST: gi|71330489|gb|DR802011.1|DR802011
EST:     TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCT                         GGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA
genomic: TCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcc ... tgtgtactagGGTGGTAATATCGAGAAAGCTACAGACTGGATTTTCAGCCACCCCGAAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCACGTGCTTATGAGCCATCTGTTGACGAAGCAAGTGTTCAAACTCTCATCTCCTTTGGATTCCAGGAAGACATTGCCATAAAGGCCCTGAAAGCTTCTgtaagattcccttttgtgatgtgttccgcataaacaattttaagattcttaactttcgggaagttggtgattgcctatctgttcccattcttgtcccctgattccgatgttatcagtcatctttgcaacgttcttatctttttctggtgtgacacttgtttcggtgtgtactag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA