1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
CTTGGCTAATGTTGTGCCAACGCTTGCAAAGTTCTACCATCAAGCCAGTGAATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTGgtatgtaaacttattcaaattttcttgtgggatattgtctgtctctgacagatctaagatttcttttggacctttggcag
species | Zea mays |
transcript | GRMZM2G099056_T01 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: AATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTG CAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTACEST: gi|32846783|gb|CD986464.1|CD986464
genomic: AATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTGgtatgtaaac ... cctttggcagCAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTAC
EST: AATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCCG CAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTACEST: gi|5608489|gb|AI902156.1|AI902156
genomic: AATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTGgtatgtaaac ... cctttggcagCAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTAC
EST: TTGCACTCGCCATATCAGCTCACTCATTT-TCTG CAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTACEST: gi|5597302|gb|AI891400.1|AI891400
genomic: TTGCACTCGCCATATCAGCTCACTCATTTATCTGgtatgtaaac ... cctttggcagCAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTAC
EST: TCATTTATCTG CAATTTGAGAGGTTATTTCAATTCACCCGGAAAGTTGACGAATTGACTTACEST: gi|30032170|gb|CB834021.1|CB834021
genomic: TCATTTATCTGgtatgtaaac ... cctttggcagCAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTAC
EST: TCGCCATATCAGCTCACTCATTTATCTG CAATTTGAGAGGTTATTTCAATTCACCCGGAAAGTTGACGAATTGACTTACEST: gi|31405680|gb|CD484412.1|CD484412
genomic: TCGCCATATCAGCTCACTCATTTATCTGgtatgtaaac ... cctttggcagCAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTAC
EST: AATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTG CAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTACEST: gi|32933807|gb|CF038619.1|CF038619
genomic: AATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTGgtatgtaaac ... cctttggcagCAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTAC
EST: AATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTG CAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTACEST: gi|30087811|gb|CB886017.1|CB886017
genomic: AATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTGgtatgtaaac ... cctttggcagCAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTAC
EST: AATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTG CAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTAC
genomic: AATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTGgtatgtaaac ... cctttggcagCAATTTGAGAGGTTATTTCAATTCAACCGGAAAGTTGACGAATTGACTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGCTAATGTTGTGCCAACGCTTGCAAAGTTCTACCATCAAGCCAGTGAATCATATGAACTAGCTTGCACTCGCCATATCAGCTCACTCATTTATCTGgtatgtaaacttattcaaattttcttgtgggatattgtctgtctctgacagatctaagatttcttttggacctttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA