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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGCTGCAGAGTCTCTGGCAGATCCTTCTGAATATCCAAATTTATTTGAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGCGTTGCTTCTCAGAGgtacacattatcacacgaactactatgttttgttctagaatattgcttaccagaagcaaaaaaaaaaaaacattgaatcacagaaactgcttattggtcc...

Basic information

species Zea mays
transcript GRMZM2G095348_T02
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 21
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 22
CAAAAGCTGCAGAGTCTCTGGCAGATCCTTCTGAATATCCAAATTTATTTGAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGCGTTGCTTCTCAGAGgtacacattatcacacgaactactatgttttgttctagaatattgcttaccagaagcaaaaaaaaaaaaacattgaatcacagaaactgct-tattggtcc---------------
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |  |||||||||| |||||| | |||| || |  | || || | |||  |  ||  || |  |    |  |  |      || |||  |||| || |   || ||| |  | || |                 
CAAAAGCTGCAGAGTCTCTGGCAGATCCTTCTGAGTATCCAAATTTATTTGAAGACTGGCAGGTTGCACTTACTGTAGAAAAGAATGTTGCTTCTCGGAGgtaaaaattaccagagaagctgctttttttattattaccatgtaacgctaccaattcttttggaagaaactattgtataaacaaacctggtacaatgataaggtctctttcttcag

upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 22
CAAAAGCTGCAGAGTCTCTGGCAGATCCTTCTGAATATCCAAATTTATTTGAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGCGTTGCTTCTCAGAGgtacacattatcacacgaactactatgttttgttctaga-atattgc--ttaccagaagcaaaaaaaaaaaaacattgaat-cacagaaactgcttattggtcc-------------
|||||||||| || ||  |||| ||||||   |||||||||||||| |||||||| ||||||||||| ||| |||| |||   |  | ||       ||   | |  | |   ||   | | | || |||| ||  | | ||||||   |    | |   |  | |  |      ||   |   || ||  |  |||   ||               
CAAAAGCTGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGATTGGCAGGTTGCACTAGCTGTCGAATCTAAAGCTGT-----GGAAACA-AGgtcagtgcagagaatgc-atattttattgcatatatattgaaatgtatatagttagtagattagtgtttttttgtgtgcaaaacatctttaactgtgttcttttattatag

upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 21
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 22
CAAAAGCTGCAGAGTCTCTGGCAGATCCTTCTGAATATCCAAATTTATTTGAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGCGTTGCTTCTCAGAGgtacacattatcacacgaactactatgttttgttctagaatattgcttaccagaagcaaaaaaaaaaaaacattgaatcacagaaactgcttattggtcc
 |||||||||||| ||  |||||||||||   || || || ||||| ||||| |||||||||||||||||     | |||   |   || |     | |||||    |||  |     |     ||  | | |  |||| ||||| |    |    |       ||    ||||  ||  |  ||  | |    |  |  
AAAAAGCTGCAGAATCATTGGCAGATCCTGAAGAGTACCCTAATTTGTTTGAGGACTGGCAGGTTGCTCTTGACATTGAATCTAAAATTTCAGAGAAAAGgtatctcttagaagttttatacacatcctatttgatagactattgttcttgattttccctttttaactctcattatattgcttaatatacaatctcatgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60347180|gb|DN214153.1|DN214153
EST:     GAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGCGTTGCTTCTCAGAG                         GGATCATTATCCTCCTGCTGACCAATACTTGAATCATGCTGAGAAGTCAGG
genomic: GAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGCGTTGCTTCTCAGAGgtacacatta ... ctatgtgcagGGATCATTATCCTCCTGCTGACCAATACTTGAATCATGCTGAGAAGTCAGG
EST: gi|211347064|gb|FK984260.1|FK984260
EST:     GAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGCGTTGCTTCTCAGAG                         GGATCATTATCCTCCTGCTGACCAATACTTGAATCATGCTGAGAAGTCAGG
genomic: GAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGCGTTGCTTCTCAGAGgtacacatta ... ctatgtgcagGGATCATTATCCTCCTGCTGACCAATACTTGAATCATGCTGAGAAGTCAGG