1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
AAACCTGTCATACAACAACTTCTCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAGgtacaaacaaatggctctaattgaactatctgtgtatccctttcttattgaatcatcagtttttaataggaacccgtatctaacctaaatgcag
species | Zea mays |
transcript | GRMZM2G082855_T03 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: TCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAG CTTCATGGGTAATCTGATGCTCCATGTGTACTGCCAAGACTCCAGCTGTGGEST: gi|211105282|gb|FL067839.1|FL067839
genomic: TCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAGgtacaaacaa ... ctaaatgcagCTTCATGGGTAATCTGATGCTCCATGTGTACTGCCAAGACTCCAGCTGTGG
EST: TCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAG CTTCATGGGTAATCTGATGCTCCATGTGTACTGEST: gi|148957564|gb|EC903660.2|EC903660
genomic: TCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAGgtacaaacaa ... ctaaatgcagCTTCATGGGTAATCTGATGCTCCATGTGTACTG
EST: TCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAG CTTCATGGGTAATCTGATGCTCCATGTGTACTGCCAAGACTCCAGCTGTGGEST: gi|211105280|gb|FL067837.1|FL067837
genomic: TCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAGgtacaaacaa ... ctaaatgcagCTTCATGGGTAATCTGATGCTCCATGTGTACTGCCAAGACTCCAGCTGTGG
EST: CTGGGAACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCCAATGAAGAG CTTCAGGGGTTATCTGATGCTCCATGTGTACTGGCCAAGACTCCAGCEST: gi|149088301|gb|EE177395.2|EE177395
genomic: CTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCC-AATGGAGAGgtacaaacaa ... ctaaatgcagCTTCATGGGTAATCTGATGCTCCATGTGTACTG-CCAAGACTCCAGC
EST: TCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAG CTTCATGGGTAATCTGATGCTCCATGTGTACTGCCAAGACTCCAGCTGTGGEST: gi|5566967|gb|AI881878.1|AI881878
genomic: TCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAGgtacaaacaa ... ctaaatgcagCTTCATGGGTAATCTGATGCTCCATGTGTACTGCCAAGACTCCAGCTGTGG
EST: TCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAG CTTCATGGGTAATCTGATGCTCCATGTGTACTGCCAAGACTCCAGCTGTGGEST: gi|211105278|gb|FL067835.1|FL067835
genomic: TCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAGgtacaaacaa ... ctaaatgcagCTTCATGGGTAATCTGATGCTCCATGTGTACTGCCAAGACTCCAGCTGTGG
EST: CTGGGCACGTCCCGTCATCGAAAAACTTTCTCAAAGTTCCCAATGGAGAG CTTCATGGGTAATCTGATGCTCCCTGTGTACTTGCCA-GACT
genomic: CTGGGCACGTCCCGTCATCGAAAAACTT-CTCAAAGTTCCCAATGGAGAGgtacaaacaa ... ctaaatgcagCTTCATGGGTAATCTGATGCTCCATGTGTACT-GCCAAGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCTGTCATACAACAACTTCTCTGGGCACGTCCCGTCATCGAAAAACTTCTCAAAGTTCCCAATGGAGAGgtacaaacaaatggctctaattgaactatctgtgtatccctttcttattgaatcatcagtttttaataggaacccgtatctaacctaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA