1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
ATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctggttctgagtattgcggcagtcttggttctgagtattgcagcacacagtctgcttctcttattttattgcccccctacaacatcttagtagataacgacccatttactgattcttattacag
species | Zea mays |
transcript | GRMZM2G073054_T01 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCEST: gi|60338294|gb|DN205267.1|DN205267
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCEST: gi|149040592|gb|EE046833.2|EE046833
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTTTCGGTTTATGCACCCAGCEST: gi|78024920|gb|DV493307.1|DV493307
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGACGCTGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCEST: gi|60394366|gb|DN227236.1|DN227236
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGACGCTGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCEST: gi|4966932|gb|AI691970.1|AI691970
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGACGCTGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCEST: gi|211101479|gb|FL457333.1|FL457333
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCTGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCEST: gi|113702675|gb|EE680179.1|EE680179
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCTGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCEST: gi|28576077|gb|CB281969.1|CB281969
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCCCTGCT GACTGGCCGCATGACACCAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCEST: gi|91878000|gb|EB407957.1|EB407957
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCEST: gi|60345781|gb|DN212754.1|DN212754
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGACGCTGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGCEST: gi|101386687|gb|EB815360.1|EB815360
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
EST: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCT GACTGGCCGCATGACAACAGGCCGTGTTCTTTTTCGGTTTATGCACCCAGC
genomic: TTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctg ... cttattacagGACTGGCCGCATGACAACAGGCCGTGTTCTTTCTCGGTCTATGCACCCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGTTTTAGATTCTGACGATGGCCTTTTCGGTGGATTTAGTCGGCTTGATCATGATGCCGAGTACTTCACTGCTgtaagtcctggttctgagtattgcggcagtcttggttctgagtattgcagcacacagtctgcttctcttattttattgcccccctacaacatcttagtagataacgacccatttactgattcttattacag
- - - - - - - - - - - - - - - GGTGGA