1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
TGCTTATGAGTGATTCTCTCGGAGGCAATGCGAAGACCTTGATGTTTGTGAATGTTTCACCAGCTGAGTCTAACTTGGAGGAGACTTACAACTCGCTAATgtatgtgcttctttgttcactgagtcttatgttccctcgtctcttggatttgctatttgtcactgtttccatctatgtggttttgatatattagctttcc...
species | Zea mays |
transcript | GRMZM2G070273_T01 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: AATGTTTCACCAGCTGAGTCTAACTTGGAGGAGACTTACAACTCGCTAAT GTATGCTTCACGGGTTCGTTGCATTGTTAATGATACGAGCAAGCATGTTGCEST: gi|30087297|gb|CB885505.1|CB885505
genomic: AATGTTTCACCAGCTGAGTCTAACTTGGAGGAGACTTACAACTCGCTAATgtatgtgctt ... aaccctgtagGTATGCTTCACGGGTTCGTTGCATTGTTAATGATACGAGCAAGCATGTTGC
EST: GTTTCACCAGCTGAGTCTAACTTGGAGGAGACTTACAACTCGCTAAT GTATGCTTCACGGGTTCGTTGCATTGTTAATGATACGAGCAAGCATGTTGCEST: gi|37382023|gb|CF627927.1|CF627927
genomic: GTTTCACCAGCTGAGTCTAACTTGGAGGAGACTTACAACTCGCTAATgtatgtgctt ... aaccctgtagGTATGCTTCACGGGTTCGTTGCATTGTTAATGATACGAGCAAGCATGTTGC
EST: AATGTTTCACCAGCTGAGTCTAACTTGGAGGAGACTTACAACTCGCTAAT GTATGCTTCACGGGTTCGTTGCATTGTTAATGATACGAGCAAGCATGTTGCEST: gi|60339647|gb|DN206620.1|DN206620
genomic: AATGTTTCACCAGCTGAGTCTAACTTGGAGGAGACTTACAACTCGCTAATgtatgtgctt ... aaccctgtagGTATGCTTCACGGGTTCGTTGCATTGTTAATGATACGAGCAAGCATGTTGC
EST: AATGTTTCACCAGCTGAGTCTAACTTGGAGGAGACTTACAACTCGCTAAT GTATGCTTCACGGGTTCGTTGCATTGTTAATGATACGAGCAAGCATGTTGCEST: gi|30087298|gb|CB885506.1|CB885506
genomic: AATGTTTCACCAGCTGAGTCTAACTTGGAGGAGACTTACAACTCGCTAATgtatgtgctt ... aaccctgtagGTATGCTTCACGGGTTCGTTGCATTGTTAATGATACGAGCAAGCATGTTGC
EST: TACAACTCGCTAAT GTATGCTTCACGGGTTCGTTGCATTGTTAATGATACGAGCAAGCATGTTGC
genomic: TACAACTCGCTAATgtatgtgctt ... aaccctgtagGTATGCTTCACGGGTTCGTTGCATTGTTAATGATACGAGCAAGCATGTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTATGAGTGATTCTCTCGGAGGCAATGCGAAGACCTTGATGTTTGTGAATGTTTCACCAGCTGAGTCTAACTTGGAGGAGACTTACAACTCGCTAATgtatgtgcttctttgttcactgagtcttatgttccctcgtctcttggatttgctatttgtcactgtttccatctatgtggttttgatatattagctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttccctc