Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctgtttgaatatgtgtatcag

Basic information

species Zea mays
transcript GRMZM2G057576_T01
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 22
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttat----tcctggggtctgcaaagtgacaagtttcacattccctt---tttaagtggat-cacatctgtttgaatatgtgtatcag---------------------
| || |||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||    || ||   ||  ||    |   |    ||  | | | |      ||    || |   | |||||   |     | |||                      
TACTTGATGATGAGTGCCCTGAAGATTTCATTAAGGGTTTGATTCTGTCTGTCCGTTCTCTCCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtatga-ttctttatattatcttgtattccacagccagcttaagggcatgtgcacatgcacacaaacatatgcttttttgtttcgttgctgatctcatcttttatatttcttttttcag

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 22
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttat----tcctggggtctgcaaagtgacaagtttcacattccctt---tttaagtggat-cacatctgtttgaatatgtgtatcag---------------------
| || |||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||    || ||   ||  |||   ||  |    ||  | | |        ||    || |   | |||||   |       |||                      
TACTTGATGATGAGTGCCCTGAAGATTTCATTAAGGGTTTGATTCTGTCTGTCCGTTCTCTCCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtatga-ttctttatattatcttgtattccacaaccagattaagggcatgtgcacacgcacacaaacatatgcttttttgttttgttgctgacctcatcttttatatttcttttttcag

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 22
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttg--aattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctgtttgaatatgtgtatcag
|  | |||||||||||||| || |||||||| || ||| | ||||| || ||||||||||| ||||| ||||||||  ||||||| ||||| |||||||||| ||  | || |||   ||  |  ||  |||| |  ||  ||     ||| | ||| |  |      |                       
TGTTAGATGATGAATGCCCTGAGGATTTCATTAAAGGTCTTATTCTTTCAGTTCGTTCTCTTCTTCCAGTTGAGCCTTTAGTTGAAGAATGTGAGAAGAGgtgtgcaagttttttccaccctgcatccccaaattaccatattattttttctcatttcactttctatgcgcag-------------------

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 22
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatc-acatctgtttgaatatgtgtatcag
| || |||||||||||| | |||||||| ||||| || ||||| || |||||||||||  | || || || ||||| || || || ||||| ||||||||||      | |||   | | |   ||      |      || ||   |   || |||  |    |    ||| ||||| ||||        
TGCTAGATGATGAATGCGCAGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCATTACTGCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGgt----ggtgttttccctttgatcctatgtgttattgctttgcattcttgtttcttattttatcctgtgtctttttga-tatgcag-----

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 22
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttg--aattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctgtttgaatatgtgtatcag
|  | |||||||||||||| |||||||| ||||| ||| | || || || ||||| ||||| || || ||||||||  ||||||| ||||| || ||||||| ||  | || | | |   |   |  |    |||  |   |   |  |||  || | | ||   |    | ||  |               
TGTTAGATGATGAATGCCCTGAAGATTTTATCAAAGGTCTTATACTTTCAGTTCGCTCTCTCCTGCCAGTTGAGCCTTTAGTTGAAGAATGTGAAAAGAGgtgtgctagttttctctctattttgcatctccagtatcgt-tgctatgttcatttctcatgttctttttttatgcatag-------------

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 22
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatc-acatctgtttgaatatgtgtatcag
   | |||||||||||| | |||||||| ||||| || ||||| || |||||||||||  | || || || ||||| || || || ||||| ||||||||||      | |||   | | |   ||      |      || ||   |   || |||  |    |    ||| ||||| ||||        
---TAGATGATGAATGCGCAGAAGATTTTATCAAAGGCTTGATCCTTTCTGTTCGTTCATTACTGCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGT----Ggtgttttccctttgatcctatgtgttattgctttgcattcttgtttcttattttatcctgtgtctttttga-tatgcag-----

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 21
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttattcctggggtctgcaaagtgacaagt-ttcacattccctttttaagtggatcacatctgtttgaatatgtgtatcag
|| | |||||||||||||| |||||||| ||||| || ||||||||||||||||||||  | || || || ||||| || || || || || || |||||||    | | | | |||       || ||         ||  ||||||| |   ||    ||    || | | || | ||           
TTTTAGATGATGAATGCCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTACTGCCAGTGGAGCCTCTTGTGGAGGAGTGTGAAAAGAGgt----agtatctgttctctaatccttcattactttttgtgctcacatttctgattattctgtggtacttttcttggtatgcag-------

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 21
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctgtttgaatatgtgtatcag
|| | ||||||||||| || |||||||| ||||| || ||||||||||||||||||||  | || || || ||||| || || || || || ||||||||||    | | | | |||       || ||          |||     || | |||    |   ||     |  |||   |||        
TTTTAGATGATGAATGTCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTACTGCCAGTGGAGCCCCTTGTGGAGGAGTGTGAGAAGAGgt----agtatcttttctctaatcctacat-----ttctttttgtgctcgcatttctgattattccgtggtacttgg-catgcag-----

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 20
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttg--aattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctgtttgaatatgtgtatcag
|  | |||||||||||||| ||||||||||| || ||| | || || || ||||||||||| ||||| ||||||||  ||||||| ||||| |||||||||| ||  | || |||   ||  |  ||  |||| |  ||  ||    |||   ||| | | || |     | ||                  
TATTAGATGATGAATGCCCTGAAGATTTCATTAAAGGTCTTATACTTTCAGTTCGTTCTCTTCTTCCAGTTGAGCCTTTAGTTGAAGAATGTGAGAAGAGgtgtgcaagttttttccaccctgcatccccaaattaccatatt----attt--tttctcattgcactttctatgcgcag-------------

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 22
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctgtttgaatatgtgtatcag
|  | |||||||||||||| |||||||| || || ||| | || || || ||||||||||| || || ||||||||  ||||||| ||||| ||||||||||  |   ||| | |  ||    ||| ||   | |    |  ||  |||  ||| | | |  ||    | ||  |               
TGTTAGATGATGAATGCCCTGAAGATTTTATTAAAGGTCTTATACTTTCAGTTCGTTCTCTCCTGCCAGTTGAGCCTTTAGTTGAAGAATGTGAGAAGAGgtgcg---tctctctatctttcatctccactatcat---tgccatgttca-tttctcatttaattttttatgcatag-------------

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 22
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctgtttgaatatgtgtatcag
| || |||||||||||||| |||||||| || || ||  | |||||||||||||||||  ||||||||||||| ||||| || || ||||| ||||||||||      | ||  |      ||| |||   ||    | ||     |      ||   |    ||  || |||||     | |  |    
TGCTTGATGATGAATGCCCTGAAGATTTTATAAAAGGCCTCATTCTCTCTGTTCGTTCATTGCTTCCTGTTGAACCACTTGTCGAGGAATGTGAGAAGAGgtgaatccttttggtcatcctggtttgc---gttcataattatgtctgtttagttctggaaactctaatatgtttctgctttttcag---

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 22
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctgtttgaatatgtgtatcag
|||| |||||||||||||| ||||||||||| || ||| | ||||| || ||||| ||||| |||||||||||||| || || || ||||| ||||| ||||      | ||||    ||     |    | | | |  ||| |      ||| ||   |   |   |||  ||||  | |   |  |||
TTCTAGATGATGAATGCCCTGAAGATTTCATTAAAGGTCTCATTCTTTCAGTTCGGTCTCTTCTTCCTGTTGAGCCCCTCGTGGAGGAATGTGAGAAAAGgtgcattgtttttacctgtgtaccgtttccattaatatttttaa----ttcttattgctttcgttttatcattttgtgttttgtttgcag

upper sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 21
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 22
TTCTGGATGATGAATGCCCGGAAGATTTCATCAAGGGTTTGATTCTCTCTGTTCGTTCTCTGCTTCCTGTTGAGCCACTAGTTGATGAATGCGAGAAGAGgtttgaattctttattcctggggtctgcaaagtgacaagtttcacattccctttttaagtggatcacatctg-tttgaatatgtgtatcag
| || ||||||||||| || ||||||||||| || ||| | ||||| ||||| || || ||||||||||||||||| || || |||||||| |||||||||  |||    | | | |||    | |||   ||  |  |||   || |  |||||||  |  ||  | | || |||| || ||  | ||||
TGCTAGATGATGAATGTCCAGAAGATTTCATTAAAGGTCTAATTCTTTCTGTCCGGTCGCTGCTTCCTGTTGAGCCCCTTGTGGATGAATGTGAGAAGAGg--tga----tgtgtccctaccatatgccctgtt-cgggtt---cactttctttttacttcaattgcttatgctttgcatgtggttttcag