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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGTCTATACGGCCAGGCCACACGCACCAAGAACAGAAAAGGTTGTAGGCATAGGGTTTCAACCTGGGTTTGATCCTTACAAGgtaacatcttgcattactatgttctatattttcattgttgaagcaactaagttattttctgggcttgcttttgcttaagctttacaattctctctttggttggtactatttatttatgggtatgacag

Basic information

species Zea mays
transcript GRMZM2G048067_T02
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T03 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 22
GGTTGTCTATACGGCCAGGCCACACGCACCAAGAACAGAAAAGGTTGTAGGCATAGGGTTTCAACCTGGGTTTGATCCTTACAAGgtaacatcttgcattactatgt--------tctatattttc----------attgttgaagcaactaagttattttctgggcttgcttttgcttaagctttacaattctctctttggttggtact-atttatttatgggtatgacag
| | || ||||| || || ||||| || |||||| ||||||||||||| || ||||| ||||| |||||||||||||| ||||||||||   ||  |    || |||        ||| |||||            ||||||  |||| | || || ||         ||   ||  || |||||||||   ||| ||||  ||| || | ||  | |||  |         
GCTAGTATATACAGCAAGACCACATGCCCCAAGATCAGAAAAGGTTGTTGGTATAGGATTTCAGCCTGGGTTTGATCCCTACAAGgtaaatcctccctcctctttgtgcacatcttctgtatttcttgtggttttaattgttagagcagccaattttttagaactatatgggattatttgagctttacagagctcccttt--ttgttatttatgcaattacag---------

upper sequence: GRMZM2G048067_T03 (Zea mays), 5'ss of exon 16
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 21
GGTTGTCTATACGGCCAGGCCACACGCACCAAGAACAGAAAAGGTTGTAGGCATAGGGTTTCAACCTGGGTTTGATCCTTACAAGgtaa--catcttgcattac---tatgttctatattttc----------attgttgaagcaactaagttattttctgggcttgcttttgcttaagctttacaattctctctttggttggtact-atttatttatgggtatgacag
| | || ||||| || || ||||| || |||||| ||||||||||||| || ||||| ||||| |||||||||||||| ||||||||||  | ||   | ||      || |||| |||||            ||||||  |||| | || || ||         ||   ||  || |||||||||   ||| ||||  ||| || | ||  | |||  |         
GCTAGTATATACAGCAAGACCACATGCCCCAAGATCAGAAAAGGTTGTTGGTATAGGATTTCAGCCTGGGTTTGATCCCTACAAGgtaaatcctccctctttgtgcacatcttctgtatttcttgtagttttaattgttagagcagccaattttttagaactttatgggattatttgagctttacagagctcccttt--ttgttatttatgcaattacag---------