1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AGCTTGATGTTCCACTGAAACTAACTCGGAAGGAACCTGAACAAAAAGTGAAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAGgtgaccctcagcattttattgaagaacttgttgtgtgatttgaatctgctattatatactaccattttttatcgaaacaaaagatgagcaaatacttcat...
species | Zea mays |
transcript | GRMZM2G032351_T01 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAG GGCAGGTTGTACGATCCCCCCTCCCGACCCCGTGCATGACTTTCAGCCTGAEST: gi|211153011|gb|FL476833.1|FL476833
genomic: AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAGgtgaccctca ... cattttgcagGGCAGGTTGTACGATCCCCCCTCCCGACCCCGTGCATGACTTTCAGCCTGA
EST: AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAG GGCAGGTTGTACGATCCCCCCTCCCGACCCCGTGCATGACTTTCAGCCTGAEST: gi|211103298|gb|FL431027.1|FL431027
genomic: AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAGgtgaccctca ... cattttgcagGGCAGGTTGTACGATCCCCCCTCCCGACCCCGTGCATGACTTTCAGCCTGA
EST: AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAG GGCAGGTTGTACGATCCCCCCTCNCCGACCCCGTGCATGACTTTCAGCCTGEST: gi|211153012|gb|FL476834.1|FL476834
genomic: AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAGgtgaccctca ... cattttgcagGGCAGGTTGTACGATCCCCCCTC-CCGACCCCGTGCATGACTTTCAGCCTG
EST: AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAG GGCAGGTTGTACGATCCCCCCTCCCGACCCCGTGCATGACTTTCAGCCTGAEST: gi|15079370|gb|BI388687.1|BI388687
genomic: AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAGgtgaccctca ... cattttgcagGGCAGGTTGTACGATCCCCCCTCCCGACCCCGTGCATGACTTTCAGCCTGA
EST: AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAG GGCAGGTTGTACGATCCCCCCTCCCGACCCCGTGCATGACTTTCAGCCTGA
genomic: AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAGgtgaccctca ... cattttgcagGGCAGGTTGTACGATCCCCCCTCCCGACCCCGTGCATGACTTTCAGCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTTGATGTTCCACTGAAACTAACTCGGAAGGAACCTGAACAAAAAGTGAAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAGgtgaccctcagcattttattgaagaacttgttgtgtgatttgaatctgctattatatactaccattttttatcgaaacaaaagatgagcaaatacttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaaa