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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATTTACACAAACTCTGGTCTTGCTATCTTGGCTTTAACTTCAAGCGCTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctgtttcttatgtacatatagatgtgcataaatagtgttcagatcgctcatcttctttacataccataggtaaaaattttgtgtggtagattgttactaaattgctcaatttttctattcatcaatcttatag

Basic information

species Zea mays
transcript GRMZM2G030422_T03
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030422_T03 (Zea mays), 5'ss of exon 21
lower sequence: LOC_Os03g14980.2 (Oryza sativa), 5'ss of exon 19
ATTGATTTACACAAACTCTGGTCTTGCTATCTTGGCTTTAACTTCAAGCGCTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTC---TGGAAAGgtgagatctgtttcttatgtacatatagatgtgcataaatagtgttcagatcgctcatcttctttacataccataggtaaaaattttgtgtggtagattgttactaaattgctcaatttttctattcatcaatcttatag
    ||||||||||| |||||| | ||||||||||||||| ||||||  ||||||||||| |||||||||||||| |||| ||| || || ||   ||||||||| | |||||  |  | |   || ||| || |||  |  |  |   |     |||| | |     |  | |||  || ||  | ||||||     |||||||||||| ||  | |  ||| ||||| |    |||| |||
---TATTTACACAAATTCTGGTGTCGCTATCTTGGCTTTAGCTTCAAATGCTGTTCATCTGCTCTGGAAATGGCCTCGCAATGACCGAAACTCAAGTGGAAAGgttaaatctggattatttacgcacataaatatgctcagtt--ttacctacctgctc-tgtataccaggt-ccaggggcaagcaatttgtgcatatgattgttactaactt-tttatgtttgctattgac---tcttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156341|gb|DY401130.1|DY401130
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
EST: gi|19058885|gb|BM737552.1|BM737552
EST:     CTGGTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
EST: gi|19058659|gb|BM737326.1|BM737326
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAA
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAA
EST: gi|22520900|gb|BU079711.1|BU079711
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAA
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAA
EST: gi|31360482|gb|CD444839.1|CD444839
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAACCGCAAGTGTATCTCCCACACTATGGCAACCACCAAGTGGCATCTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
EST: gi|22473365|gb|BU037845.1|BU037845
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
EST: gi|6095542|gb|AW120209.1|AW120209
EST:     CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG                         GCAACCGCAAGTGTATCTCCCACACTATGGCAACCACCAAGTGGCATCTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG