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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGTCTCAATCTCCCCAAACCATGAGGTTGCATCCATCTTCGCAGCAGCTTTCTTTTCTCTCTTCAATCTCTTCTCAGGCTTCTTCATTCCGAGACCGgtcagttgttgtttcaatcaccatccctgcgatccttttcctacctgtaggattaaatagaggactcatgttttttctctattcctgtttcag

Basic information

species Zea mays
transcript GRMZM2G029506_T01
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 21
lower sequence: Vv09s0002g03570.t01 (Vitis vinifera), 5'ss of exon 4
GGCTGTCTCAATCTCCCCAAACCATGAGGTTGCATCCATCTTCGCAGCAGCTTTCTTTTCTCTCTTCAATCTCTTCTCAGGCTTCTTCATTCCGAGACCGgtcagtt-gttgtttcaatcaccatccctgcgatcct--tttcctacctgtaggattaaatagaggactcatgttttttctctattcctgtttcag-------
| |||| || ||| | ||||||||  | || |||||||| || ||||||||||||| | |  |||||||||| ||||||||||||||||| || ||||| || ||||  || |    |    |||  |  |  || |   |||| |||      ||  | || |  ||| |  |     ||| |||  ||||| |        
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaa-actaac-tcaaacctccattaatgtttaaaatttcag

upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 21
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 20
GGCTGTCTCAATCTCCCCAAACCATGAGGTTGCATCCATCTTCGCAGCAGCTTTCTTTTCTCTCTTCAATCTCTTCTCAGGCTTCTTCATTCCGAGACCGgtcagtt-gttgtttcaatcaccatccctgcgatcct--tttcctacctgtaggattaaatagaggactcatgttttttctctattcctgtttcag-------
| |||| || ||| | ||||||||  | || |||||||| || ||||||||||||| | |  | |||||||| ||||||||||||||||| || ||||| || ||||  || |    |    |||  |  |  || |   |||| |||      ||  | || |  ||| |  |     ||| |||  ||||| |        
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTATTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaa-actaac-tcaaacctccattaatgtttaaaatttcag