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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTCTGTTGAAACCTCCATATCGTCCCATTTTGGAGGCATGAACTATCCATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtatattctactgcatctatgctatgttcatttctttggtgccgagaggagggtgtgctaaaaaaacatttacttaacattgttatctgagtttagacaaagcagatactgtaccatacaattttaaaccattttacagaatggatggatatggtttctgataggtttgcctttgcttcag

Basic information

species Zea mays
transcript GRMZM2G012319_T02
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G012319_T01 (Zea mays), 5'ss of exon 22
lower sequence: LOC_Os03g15900.2 (Oryza sativa), 5'ss of exon 20
TGGTTCTGTTGAAACCTCCATATCGTCCCATTTTGGAGGCATGAACTATCCATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtata-ttctactgcatctatgctatgttcatttctttggtgccgagaggagggtgtgctaaaaaaacatttacttaacattgttatctgagtttagacaaagcagatactgtaccatacaattttaaaccattttacagaatggatggatatggtttctgataggtttgcctttgcttcag
||||||||| ||||| |||||||||||||||||| | |||||||||||||| ||  |||||||||||||||| ||| |  ||||||| ||||||||||||||||  || ||||   ||| |    |||| |  |  |        |  ||        || || ||   ||     || |  ||  |   |   ||   ||                                                                                 
TGGTTCTGTAGAAACATCCATATCGTCCCATTTTAGTGGCATGAACTATCCGTCGTTGTTCAGTTCAAAACCATCAGGATATGGGGCTTCACAACAAACGgtattcttttacttagtctttttagtgttaaagtgatctccatt-attgggtttcacacttaataactgttggaa-aataacgtactgaaaacctatgaaat--------------------------------------------------------------------------------

upper sequence: GRMZM2G012319_T01 (Zea mays), 5'ss of exon 22
lower sequence: Vv07s0031g02090.t01 (Vitis vinifera), 5'ss of exon 23
TGGTTCTGTTGAAACCTCCATATCGTCCCATTTTGGAGGCATGAACTATCCATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtatatt-ctactgcatctatgctatgttcatttct-ttggtgccgagaggagggtgt--gctaaaaaaacatttacttaacattgttatctgagtttagacaaagcagatactgtaccatacaattttaaaccattttacagaatggatggatatggtttctgataggtttgcctttgcttcag
 || || |||||||| || ||||| ||||| ||||| || ||||||||||||||  |||||||||||  ||||||  |  ||||| | ||||||    | |||| |  ||| | || | | | ||| || || ||| ||  |  | |   | |||| |    | |       | || |||| | | | |      || |                                                                                      
GGGATCAGTTGAAACTTCTATATCATCCCACTTTGGTGGAATGAACTATCCATCTTTGTTCAGTTCACGACCGTCTGGCTATGGGACTTCACAATCCTCAgtatgtaactaattcaacgaggttattttaatgtctgttattttctaagtgtgggtattgattgacctggtttctagttaagaatatgaaaaacattgaa-------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211048296|gb|FL052136.1|FL052136
EST:     CATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACG                         ATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
genomic: CATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtatattcta ... tttgcttcagATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
EST: gi|74238553|gb|DT646467.1|DT646467
EST:     CATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACG                         ATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
genomic: CATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtatattcta ... tttgcttcagATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
EST: gi|22546271|gb|BU098582.1|BU098582
EST:     CATCATTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACG                         ATACGCGAAGAACCACCCTCATATTCGACGTCAGGAACTTACAGGAGGAAG
genomic: CATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtatattcta ... tttgcttcagATACGTGAAGAACCACCCTCATATTCGACGTCA-GTAC-TACA-GAGGAAG
EST: gi|211051238|gb|FL052137.1|FL052137
EST:     CATCACTGTTCARTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACG                         ATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
genomic: CATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtatattcta ... tttgcttcagATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
EST: gi|26558707|gb|CA830942.1|CA830942
EST:     CATCATTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACG                         ATACGCGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
genomic: CATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtatattcta ... tttgcttcagATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
EST: gi|76909470|gb|DV163396.1|DV163396
EST:     CATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACG                         ATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
genomic: CATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtatattcta ... tttgcttcagATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
EST: gi|87156397|gb|DY401186.1|DY401186
EST:     CATCATTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACG                         ATACGCGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA
genomic: CATCACTGTTCAGTTCAAAACCGTCAAGTCATGGGGCCTCACAACAAACGgtatattcta ... tttgcttcagATACGTGAAGAACCACCCTCATATTCGACGTCAGTACTACAGAGGAAGGAA