Sequence
atgc intronic sequence ATGC exonic sequenceGAAATTGCTATTGAGGCACATAGTGAATCAAAGTGGAAGCAGTTGGGGGAACTCGCTATGTCCACTGGAAAGgtatttgtgtcaatttttttttttctgaaatgcgcaggagaactgcacaactttgtattaagcagagaattaaagcggagagaactccaatacaccacac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 20
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 19
GAAATTGCTATTGAGGCACATAGTGAATCAAAGTGGAAGCAGTTGGGGGAACTCGCTATGTCCACTGGAAAGgtatt---tgtgtcaatttttttttttctgaaatgcgcaggagaactgcacaactttgtattaagcagagaattaaagcggagagaactccaatacaccacac-
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GACATTGCTACAGAAGTGCAAAGTGAGTCAAAATGGAAGCAATTGGGAGAATTAGCTATGTCCACTGGAAAGgtattctgtttaccaagaatggatctttcgttatctg--agaaaagtgccca--tcagtaccaatgctagcagtgtggattctctttctgggaaagacaagttt
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 20
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 19
GAAATTGCTATTGAGGCACATAGTGAATCAAAGTGGAAGCAGTTGGGGGAACTCGCTATGTCCACTGGAAAGgtatttgtgtca--atttttttttttctgaaatgcgcaggagaactgcacaactttg---tattaagcagagaattaaagcg--gagagaactccaatacaccacac
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GAAATAGCTTCAGAAGTACAGAGTGAAACCAAATGGAAGCAGTTGGGAGAATTAGCTATGTCCAATGGAAAGgttttttggctaccattaattgtttactgacagttaattgctggatgagcagccctcattcatcacacatgcatgcaaatccttggtgaaatggcagtgt-------
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 20
lower sequence: PP1S243_63V6.1 (Physcomitrella patens), 5'ss of exon 19
GAAATTGCTATTGAGGCACATAGTGAATCAAAGTGGAAGCAGTTGGGGGAACTCGCTATGTCCACTGGAAAGgtatt-tgtg-----tcaatttttttttttctgaaatgcgcaggagaactgcacaactttgtattaagcagagaattaaagcggagagaactccaatacaccacac
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ACTATAGCTGAAGAGTCACACAGCGAGTCCAAGTGGAAGCAGCTGGGTGAACTCGCAATGTCAGCTGGAAAGgtatgatgtggaaaatcagttgtgatccgtttgaaat---caagatttttgtaggaaatcaagtcttgc---gtttccgacagagaatttccctcttattcctcttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78116813|gb|DV535200.1|DV535200EST: GTGAATCAAAGTGGAAGCAGTTGGGGGAACTCGCTATGTCCACTGGAAAG CTCGAGATGGCAGAAGAATGTCTTCTTCAAGCTACAGACTTTAGTGGGTTA
genomic: GTGAATCAAAGTGGAAGCAGTTGGGGGAACTCGCTATGTCCACTGGAAAGgtatttgtgt ... agataaacagCTCGAGATGGCAGAAGAATGTCTTCTTCAAGCTACAGACTTTAGTGGGTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAATTGCTATTGAGGCACATAGTGAATCAAAGTGGAAGCAGTTGGGGGAACTCGCTATGTCCACTGGAAAGgtatttgtgtcaatttttttttttctgaaatgcgcaggagaactgcacaactttgtattaagcagagaattaaagcggagagaactccaatacaccacac
- - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - TGGAAG