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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGTATGAAATTCAGTGAAACAAGATCGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGCGGGGTTGCGGTGTACCTGgtaatttgaattatccgcaacacaagatgctgtgtgatgtcttttgaagatctaagttggttgtgatttgagtcgtaatgttgtgctgcatcatctattt...

Basic information

species Zea mays
transcript GRMZM2G391042_T02
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G391042_T02 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 20
CTGGGTATGAAATTCAGTGAAACAAGATCGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGCGGGGTTGCGGTGTACCTGgtaatttgaattatccgcaac---acaagatgctgtgtgatgtcttttgaagatctaagttggttgtgatttgagtcgtaatgttgtgctgcatcatctattt
|| || |||| ||||| ||| |||||| | ||||| |||||||||||||| || || |||||||||||||||||  ||||||||||||| ||| | |||||||||   | |||| |||||      |||  |  |    | | ||||       |  ||  | |    |   |     ||||   |||    ||| |||   
CTTGGCATGAGATTCAATGACACAAGAACAAAGTCCTCTATTCTTCATGTTTTCCCATTCAACTCAGAGAAAAAAAGAGGCGGGGTTGCAGTGCATCTGgtaattcataatatctgcaactttgacagaccccttcccctattttttttcttattgtgtatggtacattaccatgtaaaatggcatgcctagtcaacta---

upper sequence: GRMZM2G391042_T02 (Zea mays), 5'ss of exon 20
lower sequence: GLYMA17G06520.1 (Glycine max), 5'ss of exon 22
CTGGGTATGAAATTCAGTGAAACAAGATCGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGCGGGGTTGCGGTGTACCTGgtaatttgaattatccgcaacacaagatgc-tgtgtgatgtcttt--tgaagatctaagttggtt-gtgatttgagtcgtaatgttgtgctgcatcatctattt-----------------------------------------------
|| || ||||| ||        | ||||| |||||||| ||| |||||||||| || ||||| ||||| ||||||||||| || |||||    |   ||||||  |   || |   ||    ||      | ||| |  | |||  |   | |||||  || || | ||  | |    | || |  |  || |  || | ||                                                
CTTGGGATGAATTTTGACACTGCCAGATCAAAGTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACATGGGTGgtaa--tagcttgttgccattttaattcaaatatgtaaattttttgcttctgttctaaactgattagggagctaatatattatataataatgtactatattttgtttgtcatccagaccactattgctaataattttatacttttccgcag

upper sequence: GRMZM2G391042_T02 (Zea mays), 5'ss of exon 20
lower sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 21
CTGGGTATGAAATTCAGTGAAACAAGATCGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGCGGGGTTGCGGTGTACCTGgtaatttgaattatccgcaacacaagatgctgtg-tgatgtcttttgaagatctaagttggttgtgatttgagtcgtaatgttgtgctgcatcatctattt
 |||| ||||| ||   || || ||||    | || || ||||| ||||| || ||||||||||||||||||||| |||| || ||||| ||  |   |||||||   ||  | |      |   ||||| ||    |||     |||| || ||     |  ||     | |  |  |||        | |||    ||
TTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACA---Ggtaattgatatgtttccatggtcttaatgctatgactttgttgacagaagttccaaaaacctgttggacataatt-ttgtgtaagttgaaaacataggatt