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TGGAGAATGTATGTTACCAGATGCAACATCATGCACAGCTTTGACAAGTGCACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtccttttgctcgaagtttttttttttttttggttttgaaaacaaatttgttacgtctggcttgttacatgtaagtcaatcaaaatagttatagtccctagtaagaactgttcacagcacaccagcttcaatatattttagtagacttgtgcaaattctaaatgtgtattatctattgagcaaatgggcag
species | Zea mays |
transcript | GRMZM2G348675_T02 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTTGCTCTTEST: gi|33098458|gb|CF058418.1|CF058418
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CGCTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTTGCTCTTEST: gi|71444755|gb|DR825805.1|DR825805
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTTEST: gi|60338136|gb|DN205109.1|DN205109
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTTEST: gi|71769927|gb|DR967864.1|DR967864
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTTGCTCTTEST: gi|60337110|gb|DN204083.1|DN204083
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTTEST: gi|91056201|gb|EB166619.1|EB166619
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTTEST: gi|6021399|gb|AW066327.1|AW066327
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTTGCTCTTEST: gi|211426538|gb|FL064839.1|FL064839
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGA-CCCTGCTGTATTGAAGTCGCTCTTEST: gi|60342258|gb|DN209231.1|DN209231
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTTEST: gi|211436987|gb|FL183985.1|FL183985
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTTEST: gi|60358719|gb|DN225692.1|DN225692
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: GATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCNTGCTGTATTGAAGTCGCTCTTEST: gi|60398909|gb|DN231725.1|DN231725
genomic: GATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTTEST: gi|33095263|gb|CF055257.1|CF055257
genomic: CACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCTT
EST: GTCAGTGAAGATGATGTGCTGCATCGCCTGTTGCAAG GTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTTGCTCT
genomic: GTCAGTGAAGATGATGTGCTGCATCGCCTGTTG-AAGgtttggtcct ... aaatgggcagGTGGATGTCCAGGTCTCTTCTAGAGACCCCTGCTGTATTGAAGTCGCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGAATGTATGTTACCAGATGCAACATCATGCACAGCTTTGACAAGTGCACTATATTCAACTGTCAGTGAAGATGATGTGCTGCATCGCCTGTTGAAGgtttggtccttttgctcgaagtttttttttttttttggttttgaaaacaaatttgttacgtctggcttgttacatgtaagtcaatcaaaatagttatagtccctagtaagaactgttcacagcacaccagcttcaatatattttagtagacttgtgcaaattctaaatgtgtattatctattgagcaaatgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG