1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
ATATCTAAAATAAGACCATCCCTTTCATTTATTGGAGCAGAGGAAATAATGAGTCGTGTGACAGCACAAGgttggttatctgttttgtttcattttctttcaagttcttttcctaatgataacaatggaatgtag
species | Zea mays |
transcript | GRMZM2G172410_T01 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: CCTTTCATTT-TTGGAGCAGAGGAAATAATGAGTCGTGTGACAGCACAAG TTGCGGAAAGTAGTGAGCTGAATGAAGTATGGAAGGATATCCTGAACGCTGEST: gi|60359779|gb|DN226752.1|DN226752
genomic: CCTTTCATTTATTGGAGCAGAGGAAATAATGAGTCGTGTGACAGCACAAGgttggttatc ... tggaatgtagTTGCGGAAAGTAGTGAGCTGAATGAAGTATGGAAGGATATCCTGAACGCTG
EST: CCTTTCATTTATTGGAGCAGAGGAAATAATGAGTCGTGTGACAGCACAAG TTGCGGAAAGTAGTGAGCTGAAEST: gi|149107252|gb|EE189135.2|EE189135
genomic: CCTTTCATTTATTGGAGCAGAGGAAATAATGAGTCGTGTGACAGCACAAGgttggttatc ... tggaatgtagTTGCGGAAAGTAGTGAGCTGAA
EST: CCTTTCATTTATTGGAGCAGAGGAAATAATGAGTCGTGTGACAGCACAAG TTGCGGAAAGTAGTGAGCTGAATGAAGTATGGAAGGATATCCTGAACGCTGEST: gi|32864480|gb|CF004162.1|CF004162
genomic: CCTTTCATTTATTGGAGCAGAGGAAATAATGAGTCGTGTGACAGCACAAGgttggttatc ... tggaatgtagTTGCGGAAAGTAGTGAGCTGAATGAAGTATGGAAGGATATCCTGAACGCTG
EST: CCTTTCATTTATTGGAGCAGAGGAAATAATGAGTCGTGTGACAGCACAAG TTGCGGAAAGTAGTGAGCTGAATGAAGTATGGAAGGATATCCTGAACGCTG
genomic: CCTTTCATTTATTGGAGCAGAGGAAATAATGAGTCGTGTGACAGCACAAGgttggttatc ... tggaatgtagTTGCGGAAAGTAGTGAGCTGAATGAAGTATGGAAGGATATCCTGAACGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCTAAAATAAGACCATCCCTTTCATTTATTGGAGCAGAGGAAATAATGAGTCGTGTGACAGCACAAGgttggttatctgttttgtttcattttctttcaagttcttttcctaatgataacaatggaatgtag
- - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - AGAGGA