1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GAAGACAGATAATTCAGCAGTTCTTCAGAAACTTCTCCATGAGGCCAAGGAGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatctttagttgtttccttgcataccggcgatagaaatgaatatttaatcgagtgacggtttttctgtctgtag
species | Zea mays |
transcript | GRMZM2G162184_T01 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAG GTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAGEST: gi|24768493|gb|CA403622.1|CA403622
genomic: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatct ... ctgtctgtagGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAG
EST: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAG GTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAGEST: gi|22521204|gb|BU080015.1|BU080015
genomic: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatct ... ctgtctgtagGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAG
EST: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAG GTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAGEST: gi|24768929|gb|CA404058.1|CA404058
genomic: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatct ... ctgtctgtagGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAG
EST: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAG GTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAGEST: gi|113701917|gb|EE679421.1|EE679421
genomic: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatct ... ctgtctgtagGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAG
EST: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAG GTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAGEST: gi|60356980|gb|DN223953.1|DN223953
genomic: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatct ... ctgtctgtagGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAG
EST: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAG GTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAGEST: gi|32941257|gb|CF046076.1|CF046076
genomic: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatct ... ctgtctgtagGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAG
EST: ACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAG GTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAGEST: gi|60343146|gb|DN210119.1|DN210119
genomic: ACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatct ... ctgtctgtagGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAG
EST: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAG GTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAGEST: gi|6022486|gb|AW067519.1|AW067519
genomic: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatct ... ctgtctgtagGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAG
EST: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAG GTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAGEST: gi|94473558|gb|EB702516.1|EB702516
genomic: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatct ... ctgtctgtagGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAG
EST: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAG GTGGTGATTGCCAAATGCTACCATTTCTTCTGCAGTCAGTGCATACAGAAG
genomic: AGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatct ... ctgtctgtagGTTGTGATTGCCAAATGCTACCATCTCTTCTGCAGTCAGTGCATACAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGACAGATAATTCAGCAGTTCTTCAGAAACTTCTCCATGAGGCCAAGGAGTACAGGGGAATATTGAAGTGTGGTATTTGTCATGATAGGCAGAAAGAGgtagcgatctttagttgtttccttgcataccggcgatagaaatgaatatttaatcgagtgacggtttttctgtctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG