Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaacttatcaggatattccaggaaattactgtgatttacatgttgtttggtatcaattatcaatctgccaattaatcattttctttttctttctt...

Basic information

species Zea mays
transcript GRMZM2G158043_T03
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158043_T03 (Zea mays), 5'ss of exon 20
lower sequence: GLYMA10G34080.1 (Glycine max), 5'ss of exon 21
ATAAACTACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtat-gtaacttatcaggatattccaggaaattactgtgatttacatgttgtttggtatcaattatcaatctgccaattaatcattttctttttctttctt
|| || || |  |||||||||||||||||||| |||||||| ||| | ||  |||||||||  ||| |  |    | ||||       ||  ||  ||||   | ||   |||| ||   ||  ||||||    ||  | | ||||            
ATCAATTATGTTTCTGCTCATGACAATGAAACCCTATTTGACATTGTGAGCTTAAAGgtatcataaatattttcaaaattctgttttgttcatgcaattt-tttttttcatggtctctgatacaaatctg----ttccttactttcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18648749|gb|BM497568.1|BM497568
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
EST: gi|18450794|gb|BM429072.1|BM429072
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
EST: gi|87152540|gb|DY397329.1|DY397329
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
EST: gi|18648748|gb|BM497567.1|BM497567
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
EST: gi|60396203|gb|DN229072.1|DN229072
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
EST: gi|31360398|gb|CD444755.1|CD444755
EST:     ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAG                         ACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC
genomic: ACGCCTCTGCTCATGACAATGAAACACTATTTGATATTATTAGTCTAAAGgtatgtaact ... gcttgtgcagACTCCGATGGACCTCTCAATTGACGAGCGATGCAGGATAAATCATTTGTCC