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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCAAATGCTATACAGCAGAAGGAATACGCAATGGCACTTTCTGTAATCCTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtttcttgggcatttaactgaaactgaaagtttgccttgttggtggttgggttacgtaccgatgagttatatgatttaatgcag

Basic information

species Zea mays
transcript GRMZM2G151905_T03
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151905_T05 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os07g49260.1 (Oryza sativa), 5'ss of exon 20
ACGCAAATGCTATACAGCAGAAGGAATACGCAATGGCACTTTCTGTAATCCTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatg-tttcttgggcatttaac-tgaaactgaaagtttgccttgttggtggttgggttacgtaccgatgagttatatgattta-atgcag
| || |||| |||||| ||||| ||||| |||||||| |||||||||||  | || ||||| |||||||| |||||||||||||||||||||||| | |||||| |   |||||| ||  | |||  ||||||  |  || |   |||||||| |||      |  |   || |  | |||| |||  ||||||
ATGCGAATGTTATACAACAGAAAGAATATGCAATGGCTCTTTCTGTAATTTTAACTTTACATGTACCTCAAGTCATTGACAAACTTGATGACATATTAAGgtaacacaatttcttaggagtataaagtgaaacgtacggtctattttgttggtagttt-----cacagttatcaactttatgttttttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76015952|gb|DT943122.1|DT943122
EST:     ATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: ATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|37361410|gb|CF602699.1|CF602699
EST:     CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|6020477|gb|AW065405.1|AW065405
EST:     CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|211283755|gb|FL354685.1|FL354685
EST:     CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|32837283|gb|CD976961.1|CD976961
EST:     ACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: ACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|32839265|gb|CD978946.1|CD978946
EST:     ACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: ACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|60342170|gb|DN209143.1|DN209143
EST:     CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: CTGACATTACAGGTACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
EST: gi|32837702|gb|CD977380.1|CD977380
EST:     ACCTCAGGTCATTGACAAACTTGATGACATACTGAG                         TGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA
genomic: ACCTCAGGTCATTGACAAACTTGATGACATACTGAGgtaagatgtt ... tttaatgcagTGTCTGCACTACTGTCATTATAGGAAGCCGTGAAGTAAAGACTGATGACGA