1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
TGGCATCTGTAGCCAAAGAACAAGGAAAGAACAATGTTGCTTTCCTTTGTTTCTTCATGCTAGGAAAGCTGGAAGAGTGTCTTCAATTGCTAATAGAAAGgtagaggcatctgggcaagattgccatacttaaccttaattttcttctttctagtttttgactctatcccttgtacag
species | Zea mays |
transcript | GRMZM2G141587_T01 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TCTTCATGCTAGGAAAGNCTGGAAGAGTGTCTTCAATTGCTAATAGAAAG CAATCGTATTCCGGAAGCAGCATTGATGGCAAGATCTTATCTTCCAAGCAAEST: gi|32931477|gb|CF036289.1|CF036289
genomic: TCTTCATGCTAGGAAAG-CTGGAAGAGTGTCTTCAATTGCTAATAGAAAGgtagaggcat ... ccttgtacagCAATCGTATTCCGGAAGCAGCATTGATGGCAAGATCTTATCTTCCCAGCAA
EST: TTCTTCATGCTAGGAAAGCTGGAAGAGTGTCTTCAATTGCTAATAGAAAG CAATCGTATTCCGGAAGCAGCATTGATGGCAAGATCTTATCTTCCCAGCAAEST: gi|56382379|gb|CV985048.1|CV985048
genomic: TTCTTCATGCTAGGAAAGCTGGAAGAGTGTCTTCAATTGCTAATAGAAAGgtagaggcat ... ccttgtacagCAATCGTATTCCGGAAGCAGCATTGATGGCAAGATCTTATCTTCCCAGCAA
EST: TTCTTCATGCTAGGAAAGCTGGAAGAGTGTCTTCAATTGCTAATAGAAAG CAATCGTATTCCGGAAGCAGCATTGATGGCAAGATCTTATCTTCCAAGCAAEST: gi|60337474|gb|DN204447.1|DN204447
genomic: TTCTTCATGCTAGGAAAGCTGGAAGAGTGTCTTCAATTGCTAATAGAAAGgtagaggcat ... ccttgtacagCAATCGTATTCCGGAAGCAGCATTGATGGCAAGATCTTATCTTCCCAGCAA
EST: TTCTTCATGCTAGGAAAGCTGGAAGAGTGTCTTCAATTGCTAATAGAAAG CAATCGTATTCCGGAAGCAGCATTGATGGCAAGATCTTATCTTCCCAGCAAEST: gi|6095376|gb|AW120043.1|AW120043
genomic: TTCTTCATGCTAGGAAAGCTGGAAGAGTGTCTTCAATTGCTAATAGAAAGgtagaggcat ... ccttgtacagCAATCGTATTCCGGAAGCAGCATTGATGGCAAGATCTTATCTTCCCAGCAA
EST: CAATTGCTAATAGAAAG CAATCGTATTCCGGAAGCAGCATTGATGGCAAGATCTTATCTTCCCAGCAA
genomic: CAATTGCTAATAGAAAGgtagaggcat ... ccttgtacagCAATCGTATTCCGGAAGCAGCATTGATGGCAAGATCTTATCTTCCCAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCATCTGTAGCCAAAGAACAAGGAAAGAACAATGTTGCTTTCCTTTGTTTCTTCATGCTAGGAAAGCTGGAAGAGTGTCTTCAATTGCTAATAGAAAGgtagaggcatctgggcaagattgccatacttaaccttaattttcttctttctagtttttgactctatcccttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA