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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGTATGAAATTCAATGAAACAAGATTGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGTGGGGTTGCAGTGCACCTGgtaatttgaattatctgcaaccctgaagatgttgtgtgatatctcttgaagacctaagtcataacgttgtgctagatcctctcttttttaccctaccaca...

Basic information

species Zea mays
transcript GRMZM2G140328_T03
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G140328_T03 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 20
CTGGGTATGAAATTCAATGAAACAAGATTGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGTGGGGTTGCAGTGCACCTGgtaatttgaattatctgcaaccctga-agatgttgtgtgatatctcttgaagacctaagt-cataacgttgtgctagatcctctcttttttaccctaccaca
|| || |||| ||||||||| ||||||   ||||| |||||||||||||| || || |||||||||||||||||  |||| |||||||||||||| |||||||||   | ||||||||||  ||| |||     |    ||| | ||       |  ||     || ||    |  |   |  | |   ||  | || |  
CTTGGCATGAGATTCAATGACACAAGAACAAAGTCCTCTATTCTTCATGTTTTCCCATTCAACTCAGAGAAAAAAAGAGGCGGGGTTGCAGTGCATCTGgtaattcataatatctgcaactttgacagaccccttcccctattttttttcttattgtgtatggtacattaccatgtaaaatggcatgcctagtcaacta--

upper sequence: GRMZM2G140328_T03 (Zea mays), 5'ss of exon 20
lower sequence: GLYMA17G06520.1 (Glycine max), 5'ss of exon 22
CTGGGTATGAAATTCAATGAAACAAGATTGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGTGGGGTTGCAGTGCACCTGgtaat-------------ttgaatt---atctgcaaccctgaagatgttgtgtgatatctcttgaagacctaagtcataacgttgtgctagatcctctcttttttaccctaccaca----------------------------------
|| || ||||| ||  |     | ||||  |||||||| ||| |||||||||| || ||||| ||||| ||||||||||| || ||||||       |||||||             || ||||   || || ||   |   | |  |||   | |    ||   || ||||   || |  |  |  |  |   | | || |||  | | ||| |                                  
CTTGGGATGAATTTTGACACTGCCAGATCAAAGTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACATGGGTGgtaatagcttgttgccattttaattcaaatatgtaaattttttgcttctgttctaaactgattagggagctaatatattatataataatgtactatattttgtttgtcat-ccagaccactattgctaataattttatacttttccgcag

upper sequence: GRMZM2G140328_T03 (Zea mays), 5'ss of exon 20
lower sequence: GLYMA13G00420.1 (Glycine max), 5'ss of exon 20
CTGGGTATGAAATTCAATGAAACAAGATTGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGTGGGGTTGCAGTGCACCTGgtaat-------------ttgaatt---atctgcaaccctgaagatgttgtg------tgatatctc-ttgaagacctaagtcataacgttgtgctagatcctctcttttttaccctaccaca----------------------------------
|| || ||||| ||  |     | ||||   | ||||| ||| |||||||||| || ||||| ||||| ||||||||||| || ||||||   |   |||||||             || ||||   || || ||   |   | |  |||       |||||  |  ||   || ||||   || |  |  |  |  |   | ||||  ||  | | ||| |                                  
CTTGGGATGAATTTTGACACTGCCAGATCAGACTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACACGGGTGgtaataccttgttggcattttaattcaaatatgtaatttttttgcttctgttctaaactgatacattattagggagctaatatattatatgataatgtactatatcttgcttgtcat-ccagaccactattgctaataattttatacttttccgcag

upper sequence: GRMZM2G140328_T03 (Zea mays), 5'ss of exon 20
lower sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 21
CTGGGTATGAAATTCAATGAAACAAGATTGAAGTCATCTATTCTTCATGTATTTCCTTTCAACTCAGAGAAAAAGCGAGGTGGGGTTGCAGTGCACCTGgtaatttgaat-tatctgcaaccctgaagatgttgtgtgatatctcttgaagacctaagtcataacgttgtgctagatcctctcttttttaccct-accaca-------
 |||| ||||| ||  ||| || ||||    | || || ||||| ||||| || ||||||||||||||||||||| ||||||| |||||||| ||   |||||||   || | ||      | |    ||| | ||         |||  |||  ||||   ||     || | ||     | || | ||   | |  |||       
TTGGGGATGAAGTTTGATGTAATAAGAGAAGAATCCTCAATTCTCCATGTTTTCCCTTTCAACTCAGAGAAAAAGAGAGGTGGTGTTGCAGTACA---Ggtaattgatatgtttccatggtctta---atgctatga------ctttgttgacagaagttccaaaaacctgttggacataattttgtgtaagttgaaaacataggatt