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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATCCAGAGCACAACTTCATGACTTGGAACATGGTCACTATGAGATGACAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAGgttagcgatacttatctgctgggcacatgtatagtagtttgtttacctgctgctgaagcatgattgttccttagttttctaataacgagttctatgtgtgtatggaccag

Basic information

species Zea mays
transcript GRMZM2G083475_T01
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32937072|gb|CF041891.1|CF041891
EST:     GGAGAAGATTATAAG                         GTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
genomic: GGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
EST: gi|211192660|gb|FL425751.1|FL425751
EST:     CAAAAGCARTAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAG                         GYGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGA
genomic: CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGA
EST: gi|60348576|gb|DN215549.1|DN215549
EST:     CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAG                         GTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
genomic: CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
EST: gi|211356581|gb|FL434527.1|FL434527
EST:     TGGGAGAAGATTATAAG                         GTGGATGAAGCAACTTGTTCAACMCCGAGAAGGCGTGAGATAAACATTCCG
genomic: TGGGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
EST: gi|21432105|gb|BQ547595.1|BQ547595
EST:     CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAG                         GTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
genomic: CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
EST: gi|21432359|gb|BQ547849.1|BQ547849
EST:     CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAG                         GTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
genomic: CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
EST: gi|166522568|gb|EG293884.1|EG293884
EST:     TAGGTCTCTGGGAGAAGATTATAAG                         GTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
genomic: TAGGTCTCTGGGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
EST: gi|86468581|gb|DY234951.1|DY234951
EST:     CAAAAGCAATAACAGGGAATGCCGATAGGTCTTTGGGAGAAGATTATAAG                         GTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
genomic: CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
EST: gi|71774404|gb|DR972282.1|DR972282
EST:     CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAG                         GTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
genomic: CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
EST: gi|71774403|gb|DR972281.1|DR972281
EST:     CAAAAGCAATAACAGGGAATGCCGATAGGTTTTTGGGAGAAGATTATAAG                         GTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
genomic: CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
EST: gi|28910327|gb|CB331383.1|CB331383
EST:     CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAG                         GTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG
genomic: CAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAGgttagcgata ... tatggaccagGTGGATGAAGCAACTTGTTCAACACCGAGAAGGCGTGAGATAAACATTCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACATCCAGAGCACAACTTCATGACTTGGAACATGGTCACTATGAGATGACAAAAGCAATAACAGGGAATGCCGATAGGTCTCTGGGAGAAGATTATAAGgttagcgatacttatctgctgggcacatgtatagtagtttgtttacctgctgctgaagcatgattgttccttagttttctaataacgagttctatgtgtgtatggaccag

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA