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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGCCCGGTGCACACGCTCGGTTTCTGTTGgtatgttctgtgctttacaggcaaatgttttcccagttccacaattcttaattgactctttagcctgctcaccagttcaggaaacaactttgacctgtgatgttgtatctttttgcttcttaacag

Basic information

species Zea mays
transcript GRMZM2G079080_T01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079080_T01 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 21
TTATGCCCGGTGCACACGCTCGGTTTCTGTTGgtatgttctgtgctttacaggcaaatgttttcccagttccacaattcttaattgactctttagcctgctcaccagttcaggaaacaactttgacctgtgatgttgtatctttttgcttct----taacag
|||||| |||||||||||||| ||||||||||||| |||||         |    ||  ||||      ||||  ||| |   |  | || |  |  |  | |  ||||  |  |  || | |||      || ||| || | |||  | ||     |||||
TTATGCACGGTGCACACGCTCTGTTTCTGTTGgtacgttcttctgaaatgatctgaacatttt------tccatcattttctttgtattcat--gtgttattattagtt-ggacacgaattctgaaggtgaatcttgcatttcttttttcctggtccaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6021559|gb|AW066487.1|AW066487
EST:     TTATGCCCGGNGCACACGCTCGGTTTGTGGTG                         TCCCTCCTGCATACTACGCACACTTGGCAGCATTGCGGGCTCGGTTCTACA
genomic: TTATGCCCGGTGCACACGCTCGGTTTCTGTTGgtatgttctg ... ttcttaacagTCCCTCCTGCATACTACGCACACTTGGCAGCATTCCGGGCTCGGTTCTACA
EST: gi|5936746|gb|AW060014.1|AW060014
EST:     TTATGCCCGGTGC-CACG-TCGGTTTCTGTTG                         TCCCTCCTGCATACTACGCACACTTGGCAGCATTCCGGGCTCGGTTCTACA
genomic: TTATGCCCGGTGCACACGCTCGGTTTCTGTTGgtatgttctg ... ttcttaacagTCCCTCCTGCATACTACGCACACTTGGCAGCATTCCGGGCTCGGTTCTACA