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21 5' 3' |
GGATCTTGGATTGTTAAACAGAGTGTGGGCAAGAAAGCTTGCTTGGTTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctataagcatgtcatctgttagcttctcttgtaacattctactatgttttatcatccaaatgcagccttgccgtgtgtttttgttcctactggat...
species | Zea mays |
transcript | GRMZM2G069976_T01 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAG CTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTAEST: gi|37379498|gb|CF626493.1|CF626493
genomic: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctata ... aattttccagCTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTA
EST: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAG CTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTAEST: gi|71298058|gb|DR785006.1|DR785006
genomic: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctata ... aattttccagCTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTA
EST: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAG CTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTAEST: gi|211124229|gb|FL321156.1|FL321156
genomic: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctata ... aattttccagCTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTA
EST: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAG CTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTAEST: gi|32836585|gb|CD976263.1|CD976263
genomic: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctata ... aattttccagCTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTA
EST: TTGGACAAGCATTAGAAATCAATTATTTTCGGGGAAGAAACTATTTGGAG CTTGGAGTTGATATEST: gi|71298057|gb|DR785005.1|DR785005
genomic: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctata ... aattttccagCTTGGAGTTGATAT
EST: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAG CTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTAEST: gi|211429970|gb|FL331477.1|FL331477
genomic: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctata ... aattttccagCTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTA
EST: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAG CTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTAEST: gi|211520390|gb|FL360200.1|FL360200
genomic: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctata ... aattttccagCTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTA
EST: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAG CTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTAEST: gi|211318393|gb|FL341250.1|FL341250
genomic: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctata ... aattttccagCTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTA
EST: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAG CTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTAEST: gi|211186353|gb|FL348559.1|FL348559
genomic: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctata ... aattttccagCTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTA
EST: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAG CTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTA
genomic: TTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctata ... aattttccagCTTGGAGTTGATATTGGTTCATCAACGGTGGCACGAGGTGTGGTGAGCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCTTGGATTGTTAAACAGAGTGTGGGCAAGAAAGCTTGCTTGGTTGGACAAGCATTAGAAATCAATTATTTTCGTGGAAGAAACTATTTGGAGgtaagctataagcatgtcatctgttagcttctcttgtaacattctactatgttttatcatccaaatgcagccttgccgtgtgtttttgttcctactggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG