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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATTAATGTTTGTGACCGCTTTGGATTTGTTCCAGATCTGACTCACTATCTATATACAAACAATATGCTTCGGTATATTGAGGGCTATGTACAAAAAgtatgtacatccttgaagtcactgttattttgggcgtcattcttcatctggtatttcaagcatttgtttgattgtttccttttgtcttgtatgtag

Basic information

species Zea mays
transcript GRMZM2G057576_T01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 21
ACTGATTAATGTTTGTGACCGCTTTGGATTTGTTCCAGATCTGACTCACTATCTATATACAAACAATATGCTTCGGTATATTGAGGGCTATGTACAAAAAgtatgtacatccttgaagtcactgttattttgggcgtcattcttcatctggtatttcaagcatttgtttgattgtttccttttgtcttgtatgtag
 ||||||||||| || |||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||| |  || |  || ||| |||||||  | |  ||||  |||   |  | |   | | ||||   || || ||| | ||| | |||||     
GCTGATTAATGTCTGCGACCGCTTTGGATTTGTTCCAGATTTGACCCACTATCTGTATACAAATAATATGCTTCGGTATATTGAAGGCTATGTACAGAAAgtatgcaactcttccaattcagtgttattg-gagtatcatcattc---tcatgtgctatgtatttaaatgcttattttcctttatattgtag----

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 19
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 21
ACTGATTAATGTTTGTGACCGCTTTGGATTTGTTCCAGATCTGACTCACTATCTATATACAAACAATATGCTTCGGTATATTGAGGGCTATGTACAAAAAgtatgtacatccttgaagtcactgttattttgggcgtcattcttcatctggtatttcaagcatttgtttgattgtttccttttgtcttgtatgtag
 ||||||||||| || |||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||| |  || |  || ||| |||||||  | |  ||||  |||   |  | |   | | ||||   |  || ||| | ||| | |||||     
GCTGATTAATGTCTGCGACCGCTTTGGATTTGTTCCAGATTTGACCCACTATCTGTATACAAATAATATGCTTCGGTATATTGAAGGCTATGTACAGAAAgtatgcaactcttccaattcagtgttattg-gagtatcatcattc---tcatgtgctatgtatttaaattcttattttcctttatattgtag----

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 19
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 20
ACTGATTAATGTTTGTGACCGCTTTGGATTTGTTCCAGATCTGACTCACTATCTATATACAAACAATATGCTTCGGTATATTGAGGGCTATGTACAAAAAgtat-gtacat--ccttgaagtcactgttattttgggcgtcattcttcatctggtatttcaagcatttgtttgatt-gtttccttttgtcttgtatgtag
 || ||||||||||||||||| |||||||||||||| ||||| || ||||||||||| |||| ||| |||||||| || ||||| || ||||| || || ||||  ||  |  | || |     |||| || |||    | |||   ||  |  ||| |      | ||    | |  |  | || || ||| | | |||
TCTAATTAATGTTTGTGACCGGTTTGGATTTGTTCCGGATCTAACACACTATCTATACACAAGCAACATGCTTCGTTACATTGAAGGTTATGTTCAGAAGgtattatagtttgcattaataatgctgtaatcttgc---ttattacacaaatactatctactttctctgccccactcataacattgtgccttctttatag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 19
lower sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 21
ACTGATTAATGTTTGTGACCGCTTTGGATTTGTTCCAGATCTGACTCACTATCTATATACAAACAATATGCTTCGGTATATTGAGGGCTATGTACAAAAAgtatgtacatccttgaagtcactgttattttgggcgtcattcttcatctggtatttcaagcatttgtttgattgtttccttttgtcttgtatgtag
  |||||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||| ||| |||| || ||||| |||||||| || || ||||        | | || |    |||| |   | ||  |   |  |||  |  |      || |      | ||  | || | |   |       
TTTGATTAATGTTTGTGATCGTTTTGGATTTGTTCCAGATCTAACACACTATCTATACACAAACAACATGGTTCGCTACATTGAAGGCTATGTTCAGAAGgtataa------tagtagccttgcttatctcatgagtgctatctactctttttctctgcctatgtaaaacttcgtgcctttctatacag-------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 19
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 20
ACTGATTAATGTTTGTGACCGCTTTGGATTTGTTCCAGATCTGACTCACTATCTATATACAAACAATATGCTTCGGTATATTGAGGGCTATGTACAAAAAgtat-gtacat--ccttgaagtcactgttattttgggcgtcattct----tcatctggtatttcaagcatttgtttgattgtttccttt-tgtcttgtat-gtag
 |||||||||||||||||||| |||||||||||||| ||||| || ||||||||||| |||||||| |||||||| || ||||| || ||||| || || ||||  ||  |  | || |     |||| |  |||    | |          |||| |||| |      | ||    | |  |  |||| || ||||| |  |||
TCTGATTAATGTTTGTGACCGATTTGGATTTGTTCCGGATCTAACACACTATCTATACACAAACAACATGCTTCGTTACATTGAAGGTTATGTTCAGAAGgtattatagtttgcattaataatgctgtaaccttgctttttacatgaatactatctagtatctactttctctgccccactcataactttgtgccttgttttatag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 19
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 21
ACTGATTAATGTTTGTGACCGCTTTGGATTTGTTCCAGATCTGACTCACTATCTATATACAAACAATATGCTTCGGTATATTGAGGGCTATGTACAAAAAgtatgtacatccttgaagtcactgttattttgggcgtcattcttcatctggtatttcaagcatttgtttgattgtttccttttgtcttg-tatgtag
  ||||||| |||||||| || |||||||||||||||||||| || ||||||||||| |||||||| ||| |||| || ||||| |||||||| || || ||||            |||  || ||  ||    | | |||  | ||||  | |||      | ||  |   |    | || || |||  |||  ||
TTTGATTAACGTTTGTGATCGTTTTGGATTTGTTCCAGATCTAACACACTATCTATACACAAACAACATGGTTCGCTACATTGAAGGCTATGTTCAGAAGgtata---------atagtagct-ttgcttatctcatgattgct-atctactctttt---tctctgcctatctaaaactttgtgcctttctatacag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 19
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 21
ACTGATTAATGTTTGTGACCGCTTTGGATTTGTTCCAGATCTGACTCACTATCTATATACAAACAATATGCTTCGGTATATTGAGGGCTATGTACAAAAAgtatgtacatccttgaagtcactgttattttgggcgtcattcttcatctg---gtatttcaagcatttgtttgattgtttc---cttttgtcttgtatgtag---------------
| | || || || ||||| || ||||| |||||||||||||| || || ||||| || || | ||| ||||| || ||||||||||| ||||| ||||| |||| |   |       ||     ||| |||    |    ||   ||  |   |||||| ||   |||    | |  | ||   | |   | |  |||||                 
ATTAATAAACGTGTGTGATCGTTTTGGTTTTGTTCCAGATCTCACCCATTATCTCTACACCAGCAACATGCTGCGTTATATTGAGGGATATGTTCAAAAGgtatttgt-tgtgacgggtggtatttaatttttatgattctcaatataggagtgtattttaaatctttccaggctgatatcaaacatgaatttcttatgttatccttcttgctttag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 19
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 21
ACTGATTAATGTTTGTGACCGCTTTGGATTTGTTCCAGATCTGACTCACTATCTATATACAAACAATATGCTTCGGTATATTGAGGGCTATGTACAAAAAgtatgtacatcctt-gaagtcact-gttattttgggcgtcattcttcatctgg-tatttcaagcatttgtttg-attgtttccttttgtcttgtatgtag--------------------------------
|||||||||||| ||||| || ||||| |||||||||||||| || || ||  ||||||| || |||||||| ||||||||||| || ||||| ||||| |||     |   |  | ||| | |  ||  |||     |  |||   ||   | | |||||    |||  ||| | ||  ||| | | |   | |  |                                  
ACTGATTAATGTCTGTGATCGTTTTGGTTTTGTTCCAGATCTCACCCATTACTTATATACTAATAATATGCTCCGGTATATTGAAGGTTATGTTCAAAAGgtacaattactgtaaggagttatttatttatttatttatttttccaaatgaagatgtttcattattttaattgcactgagtccatgtctgcagaagatgaaccatgtattttcttttgtctttaattgatag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 19
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 21
ACTGATTAATGTTTGTGACCGCTTTGGATTTGTTCCAGATCTGACTCACTATCTATATACAAACAATATGCTTCGGTATATTGAGGGCTATGTACAAAAAgtatgtacatccttgaagtcactgttattttgggcgtcattcttcatctggt-atttcaagcatttgtttgattgtttccttttgtctt-gtatgtag---------------------------------------
 ||||||||||| |||||||| ||||| ||||| |||||||| || || || ||||| || ||||| |||||||| |||||||| || ||||| ||||| || ||     | |  |     ||   |||||||    | ||       || | |  ||  |    || || | ||      ||  | || || |  |                                        
GCTGATTAATGTGTGTGACCGTTTTGGTTTTGTCCCAGATCTCACACATTACCTATACACGAACAACATGCTTCGATATATTGAAGGTTATGTTCAAAAGgtgtgagttccttctagaattctagaattttggatcccctttgggtcatgatgaactcctgtggatgcttcaatgccctaattaattttagtcttcaattatttgattaaattaattgcttttgcttctcttgatag