Sequence
atgc intronic sequence ATGC exonic sequenceTTGTTCAACTGTGCAGCCAGTTGTTTCAATTGAAAGAACGGTCTTCTACAGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCATATGCCATTGCTCAGgtaaagaaatgtcgttgaactgtgcagacacagtgataactaaggtgctatttgctctccgtagcctctcaaattttatgcttcgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 16
TTGTTCAACTGTGCAGCCAGTTGTTTCAATTGAAAGAACGGTCTTCTACAGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCATATGCCATTGCTCAGgtaaagaaatgtcgttgaactgtgcagacacagtgataactaaggtgctatttgctctccgtagcctctcaaatttt-atgcttcgcag---
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TTGTGCGACTGTGCAGCCAATCGTGTCGATTGAGAGAACAGTTTTCTACCGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCCTATGCCATTGCTCAGgtaacttatggtggtag-------------ctaaggcagttaaggtataatttgtttccaggagttgctcaactcttgataatttgttgtag
upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 20
lower sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 20
TTGTTCAACTGTGCAGCCAGTTGTTTCAATTGAAAGAACGGTCTTCTACAGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCATATGCCATTGCTCAGgtaaagaaatgtcgttgaactgtg--cagacacagtgataacta-aggtgctatttgctctccgtagcctctcaaattttatgc--ttcgcag
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TTGCCAAACTGTTCAACCAGTAGTAGCCGTTGAAAGAACGGTATTTTATCGAGAAAGAGCTGCTGGGATGTATTCTGCTTTGCCTTATGCCATTGCACAGgttaaaggatggatttattttttagacaactataaaacttattacatgttgtatttgttgcttattatgctagcatttttgtttcatttgcag
upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 20
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 19
TTGTTCAACTGTGCAGCCAGTTGTTTCAATTGAAAGAACGGTCTTCTACAGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCATATGCCATTGCTCAGgtaaagaaatg--tcgttgaactgtgcagacacagtgataactaaggtgct-------atttgctctccgtagcctctcaaattttatgcttcgcag--------------------------------
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CTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACGGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaatggtctatttaagca-acatgagtgataataaccagttcatttctgtaaatttgcttcaaattcagccacactttcgacacttgataaagtctcatataatctattttggtggtatgcag
upper sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 20
lower sequence: Vv09s0002g03570.t01 (Vitis vinifera), 5'ss of exon 3
TTGTTCAACTGTGCAGCCAGTTGTTTCAATTGAAAGAACGGTCTTCTACAGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCATATGCCATTGCTCAGgtaaagaaatg--tcgttgaactgtgcagacacagtgataactaaggtgct-------atttgctctccgtagcctctcaaattttatgcttcgcag--------------------------------
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CTGCTCAACAGTCCAACCAATTGTAGCGGTTGAAAGAACCGTGTTCTATCGTGAAAGAGCTGCTGGGATGTACTCTGCCATGCCATATGCCATGGCCCAGgtgaggaaatggtctatttaagca-acatgagtgataataaccagttcatttctgtaaatttgcttcaaatttagccacactttctacacttgataaagtctcatataatctattttggtggtatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120481344|gb|EH211263.1|EH211263EST: GAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCATATGCCATTGCTCAG GTTGTTATAGAGATACCATATGTATTTGTGCAAACAACGTACTACACCCTC
genomic: GAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCATATGCCATTGCTCAGgtaaagaaat ... tgcttcgcagGTTGTTATAGAGATACCATATGTATTTGTGCAAACAACGTACTACACCCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTTCAACTGTGCAGCCAGTTGTTTCAATTGAAAGAACGGTCTTCTACAGAGAGAGGGCTGCTGGGATGTACTCTGCTATGCCATATGCCATTGCTCAGgtaaagaaatgtcgttgaactgtgcagacacagtgataactaaggtgctatttgctctccgtagcctctcaaattttatgcttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT