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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTTGCGCGGTAGTGGACAAGTGGTGAATGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaataatagttcacacttgttgaaaaagaatttattttttttctacgacggttattaacttatctctgttctttgttgcag

Basic information

species Zea mays
transcript GRMZM2G028535_T01
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028535_T01 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os01g62900.1 (Oryza sativa), 5'ss of exon 20
CATTTTGCGCGGTAGTGGACAAGTGGTGAATGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaataatagttcacacttgttgaaaaagaatttattttttttctacgacggttattaacttatctctgttctttgttgcag
|||||| || || ||||||||||| ||||| || ||||||||||| ||||||||||||| ||| || |||||||| ||||| | ||| |  |  || |    | |||||| |     || |  |          | ||| |||| | ||    |   | ||| |||
CATTTTACGAGGAAGTGGACAAGTAGTGAACGGCGACAAGGGAGTTGTTTACACCCACAGGGAGCTCCCTTTGCAGTGAGgtaggtagtgttctttta----ttttgaaagatggcatactact----------gattactaacct-tcaacatctctggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60344250|gb|DN211223.1|DN211223
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|213188133|gb|FM182573.1|FM182573
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCTCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCC-CCTTTTAA
EST: gi|32833965|gb|CD973643.1|CD973643
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCTCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCC-CCTTTTAA
EST: gi|32845938|gb|CD985619.1|CD985619
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCTCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCC-CCTTTTAA
EST: gi|67017479|gb|CO446228.1|CO446228
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|6564250|gb|AW231872.1|AW231872
EST:     TGGTGNCAAGGGAGTGGTTTACACCCCCAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCCCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACT-CCCCTTTTAA
EST: gi|6022040|gb|AW066983.1|AW066983
EST:     TGGTGACAAGGGAGTGGTTTACACCCCCAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|211181079|gb|FL441227.1|FL441227
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|60355192|gb|DN222165.1|DN222165
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|32793645|gb|CD945881.1|CD945881
EST:     GATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTT
genomic: GATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTT
EST: gi|101391685|gb|EB817779.1|EB817779
EST:     TGGTGACAAGGGAGTGGTTTACACCCCCAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|6564119|gb|AW231741.1|AW231741
EST:     TGGTGCCAAGGGAGTGGTTTACACCCCCAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCCCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACT-CCCCTTTTAA
EST: gi|32930909|gb|CF035721.1|CF035721
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCTCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCC-CCTTTTAA
EST: gi|149066719|gb|EE286860.2|EE286860
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|211181077|gb|FL441225.1|FL441225
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|61118748|gb|DN559709.1|DN559709
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|32930810|gb|CF035622.1|CF035622
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCTCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCC-CCTTTTAA