1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GAGGCCAACGAATTGCTGCGTTCCAAACTGTCGTCTGCGGCATCGGCAACTCTTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACAgtgagaccacgctctgaactgaaacttggcctcacctaagtgccgtgcagtgcagtgcatagcatagcatagcatagcatggagccatggacagcttcctcttctttttctttttcccctttacaaccccattcctgccattccag
species | Zea mays |
transcript | GRMZM2G024576_T01 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TCTTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACA GCTCGCTGAAGCTTGACCGCGACGCGTGCGCGAACATCGGGGCGGTCCTCAEST: gi|211200484|gb|FL442524.1|FL442524
genomic: TCTTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACAgtgagaccac ... gccattccagGCTCGCTGAAGCTTGACCGCGACGCGTGCGCGAACATCGGGGCGGTCCTCA
EST: TCTTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACA GCTCGCTGAAGCTTGACCGCGACGCGTGCGCGAACATCGGGGCGGTCCTCAEST: gi|211357185|gb|FL346877.1|FL346877
genomic: TCTTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACAgtgagaccac ... gccattccagGCTCGCTGAAGCTTGACCGCGACGCGTGCGCGAACATCGGGGCGGTCCTCA
EST: TCTTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACA GCTCGCTGAAGCTTGACCGCGACGCGTGCGCGAACATCGGGGCGGTCCTCAEST: gi|211159118|gb|FL458114.1|FL458114
genomic: TCTTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACAgtgagaccac ... gccattccagGCTCGCTGAAGCTTGACCGCGACGCGTGCGCGAACATCGGGGCGGTCCTCA
EST: TTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTYTTCAATTGACA GCTCGCTGAAGCTTGACCGCGACGCGTGCGCGAACATCGGGGCGGTCCTCAEST: gi|101382780|gb|EB813445.1|EB813445
genomic: TTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACAgtgagaccac ... gccattccagGCTCGCTGAAGCTTGACCGCGACGCGTGCGCGAACATCGGGGCGGTCCTCA
EST: TCTTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACA GCTCGCTGAAGCTTGACCGCGACGCGTGCGCGAACATCGGGGCGGTCCTCA
genomic: TCTTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACAgtgagaccac ... gccattccagGCTCGCTGAAGCTTGACCGCGACGCGTGCGCGAACATCGGGGCGGTCCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGCCAACGAATTGCTGCGTTCCAAACTGTCGTCTGCGGCATCGGCAACTCTTGAAGATATCGACGTTGCAAACGAGGCTCTCCTTTCTTCAATTGACAgtgagaccacgctctgaactgaaacttggcctcacctaagtgccgtgcagtgcagtgcatagcatagcatagcatagcatggagccatggacagcttcctcttctttttctttttcccctttacaaccccattcctgccattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA