Sequence
atgc intronic sequence ATGC exonic sequenceTATTGCCACAGACATAGCAGAGACCAGCATTACAATTGATGATGTAGTATATGTAGTTGATACTGGAAAGCACAAGGAGAACCGTTATAATCCACACAAGgtcagttttctatttttttactatacttttggaaaaaatacaggattcacaatttgtatattctagaagttttttacggttcagatttactgaaagagca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G013283_T01 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os04g35260.1 (Oryza sativa), 5'ss of exon 20
TATTGCCACAGACATAGCAGAGACCAGCATTACAATTGATGATGTAGTATATGTAGTTGATACTGGAAAGCACAAGGAGAACCGTTATAATCCACACAAGgtcagttttctattttttt--actatacttttggaaaaaatacaggattcacaatttgtata------ttctagaagttttttacggttcagatttactgaaagagca
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TGTCGCCACAGACATAGCAGAGACCAGCATTACAATTGATGATGTAATTTATGTAGTTGATACTGGGAAGCACAAGGAAAATCGCTATAACCCGCAGAAGgtcacctttctcttgtttgtgcctgtaaatttg-aatgagtacaa-atatagcacttgtacaatcctttcccagggattttatcccttttattttca-tgatt-----
upper sequence: GRMZM2G013283_T01 (Zea mays), 5'ss of exon 20
lower sequence: GLYMA17G00440.1 (Glycine max), 5'ss of exon 1
TATTGCCACAGACATAGCAGAGACCAGCATTACAATTGATGATGTAGTATATGTAGTTGATACTGGAAAGCACAAGGAGAACCGTTATAATCCACACAAGgt-cagttttctatttttttactat---acttttggaaaaaatacagg-attcacaatttgtatattctagaagttttttacggttcagatttactgaaagagca
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TATAGCGACAAATATAGCAGAGACAAGCATAACAATAGATGATGTGATATATGTAATTGATTGTGGAAAGCATAAAGAGAATCGCTACAATCCTCAGAAGgtatggtttgtttcttattttcaatgagacaattgcataaaatatatttattcatagatctggtttgtttg----tctttatggttgatactag-----------
upper sequence: GRMZM2G013283_T01 (Zea mays), 5'ss of exon 20
lower sequence: AT1G58060.1 (Arabidopsis thaliana), 5'ss of exon 21
TATTGCCACAGACATAGCAGAGACCAGCATTACAATTGATGATGTAGTATATGTAGTTGATACTGGAAAGCACAAGGAGAACCGTTATAATCCACACAAGgtcagttttctatttttttactatacttttggaaaaaatacaggattcacaatttgtatattctagaagt---tttttacggttcagatttactgaaagagca
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CGCAGCTACAAATATTGCAGAGACCAGTATAACAATTGATGATGTGGTGTATGTGATTGACAGTGGCAAACACAAGGAAAATCGCTACAATCCACAGAAGgt--attctgaattctaatgaattcattcagttgcatatccttgtacggcgatgcttgtagaccaatatccaatttttatgtttgtttctttccccctttga-
upper sequence: GRMZM2G013283_T01 (Zea mays), 5'ss of exon 20
lower sequence: Vv12s0035g00800.t01 (Vitis vinifera), 5'ss of exon 19
TATTGCCACAGACATAGCAGAGACCAGCATTACAATTGATGATGTAGTATATGTAGTTGATACTGGAAAGCACAAGGAGAACCGTTATAATCCACACAAGgtcagttttctatttttttactatacttttggaaaaaatacaggattc----acaatttgtatattctagaagttttttacggttcagatttactgaaagagca
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TATAGCCACAAACATAGCAGAAACCAGCATAACGATAGATGATGTGGTGTATGTGATTGATTGTGGAAAGCATAAGGAAAATCGTTATAATCCACAGAAGgttcgttcttttctatatta--atgatcatggcattaagaatggctcctttaacaaatcatactctcgtataattgtagatg-taaacagttagctttgtatt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32915243|gb|CF020055.1|CF020055EST: GTNAGTTGATACGTGGAAAGCACAAGGAGAACCGTTATAATCCACACAAG AAAATGTCAAGCATAGTAGAAGATTGGATTTCTCGTGCAAATGCAAAACAG
genomic: GT-AGTTGATAC-TGGAAAGCACAAGGAGAACCGTTATAATCCACACAAGgtcagttttc ... atctgtgcagAAAATGTCAAGCATAGTAGAAGATTGGATTTCTCGTGCAAATGCAAAACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTGCCACAGACATAGCAGAGACCAGCATTACAATTGATGATGTAGTATATGTAGTTGATACTGGAAAGCACAAGGAGAACCGTTATAATCCACACAAGgtcagttttctatttttttactatacttttggaaaaaatacaggattcacaatttgtatattctagaagttttttacggttcagatttactgaaagagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA