1 5' 3' | 2 5' 3' | 3 5' 3' |
TCTTGTGTATCAAGAGAAAAGGACCATTGTCATGGAGCGGAAGCAGAAGAAGGTGCAAAAAGAGGAGGCAGAGAAGCATCTACGCCTTCAACAGGACCTGgtgtgatattctttgtgtgagcttcgtgtttagcttaattaatttcttcatgttaattatgtcgtctccttgatttccctccag
species | Zea mays |
transcript | GRMZM5G899800_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGTGCAAAAAGAGGAGGCAGAGAAGCATCTACGCCTTCACCAGGACCTG AAACTGTTGAAGACAGAGCATTACCTTTGGCAACTCTATACCATCGAAAAAEST: gi|60344129|gb|DN211102.1|DN211102
genomic: AGGTGCAAAAAGAGGAGGCAGAGAAGCATCTACGCCTTCAACAGGACCTGgtgtgatatt ... ttccctccagAAACTGTTGAAGACAGAGCATTACCTTTGGCAACTCTATACCATCGAAAAA
EST: AGGTGCAAAAAGAGGAGGCAGAGAAGCATCTACGCCTTCAACAGGACCTG AAACTGTTGAAGACAGAGCATTACCTTTGGCAACTCTATACCATCGAAAAAEST: gi|60336873|gb|DN203846.1|DN203846
genomic: AGGTGCAAAAAGAGGAGGCAGAGAAGCATCTACGCCTTCAACAGGACCTGgtgtgatatt ... ttccctccagAAACTGTTGAAGACAGAGCATTACCTTTGGCAACTCTATACCATCGAAAAA
EST: AGGTGCAAAAAGAGGAGGCAGAGAAGCATCTACGCCTTCAACAGGACCTG AAACTGTTGAAGACAGAGCATTACCTTTGGCAACTCTATACCATCGAAAAA
genomic: AGGTGCAAAAAGAGGAGGCAGAGAAGCATCTACGCCTTCAACAGGACCTGgtgtgatatt ... ttccctccagAAACTGTTGAAGACAGAGCATTACCTTTGGCAACTCTATACCATCGAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGTGTATCAAGAGAAAAGGACCATTGTCATGGAGCGGAAGCAGAAGAAGGTGCAAAAAGAGGAGGCAGAGAAGCATCTACGCCTTCAACAGGACCTGgtgtgatattctttgtgtgagcttcgtgtttagcttaattaatttcttcatgttaattatgtcgtctccttgatttccctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC