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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACGCACTACCTCGCCAGGAAGGCCGCCGACGCCCGCTTCGCCCCGCGCGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgcacatatatgagtgctgagtgctaactgctatcagatttaattaagctaggttggtttcctcgctcctccattaatgactgacgtcacacgtgctcgccatgtacgtacggtgtggtgtgtgtgcag

Basic information

species Zea mays
transcript GRMZM5G898290_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G898290_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g36880.1 (Oryza sativa), 5'ss of exon 2
ATCACGCACTACCTCGCCAGGAAGGCCGCCGAC---GCCCGCTTCGCCCCGCGCGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagc-atgcacatata-tgagtgctgagtgctaactgctatcagatttaattaagc-taggttggtttcctcgctcctccattaatgactgacgtcacacgtgctcgccatgtacgtacggtgtggtgtgtgtgcag------------
   ||||||||||||  | | ||||||||||||   ||| | |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||  |  ||   | |   ||   ||  |   | ||| |   | |   || || ||  | |  || |    |      | |  |||  |  || ||| |      |   |  | | |  |||||||| |              
---ACGCACTACCTCCTCCGCAAGGCCGCCGACCCCGCCGGGTTCGCCGCGCGCGCCGTCGGAGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagccaagcttagctagctactctcgatctctctcaagtctcaaac--agtcgcgcgtacgtatgatcgctagtgagtagtactaggtttgatttttcatgtgatttatgggggtgatcagagatgtgtgtgtacgtgtgcgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78085883|gb|DV514276.1|DV514276
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|71441853|gb|DR822903.1|DR822903
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|71317486|gb|DR795459.1|DR795459
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|149080827|gb|EE169898.2|EE169898
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|78075643|gb|DV504077.1|DV504077
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|148990310|gb|EE031912.2|EE031912
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|76287206|gb|DV026774.1|DV026774
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|149108650|gb|EE292890.2|EE292890
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|149071005|gb|EE159410.2|EE159410
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|89759018|gb|DY687976.1|DY687976
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|74232934|gb|DT640848.1|DT640848
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|149088337|gb|EE177434.2|EE177434
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|74243340|gb|DT651254.1|DT651254
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
EST: gi|78080430|gb|DV508842.1|DV508842
EST:     CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCAT                         CCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC
genomic: CGCCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCATgtaagcatgc ... gtgtgtgcagCCCGGGCGACGATGGGCGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACC