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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGTGGTGGACAGGAACATCCTCCCCTACTGCAGCATCGACAGGAAGCAGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctacaacaaggacatgattttcagcttctttgatatgatttcgcttcacgtctcatcattgatcgccccccccctccaatggaccag

Basic information

species Zea mays
transcript GRMZM5G896082_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149051802|gb|EE155929.2|EE155929
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|149070758|gb|EE159171.2|EE159171
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|71325794|gb|DR799576.1|DR799576
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|76293829|gb|DV033397.1|DV033397
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|50329134|gb|CO524260.1|CO524260
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|148959398|gb|EC905432.2|EC905432
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|78092904|gb|DV521278.1|DV521278
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|71449206|gb|DR830256.1|DR830256
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|74239749|gb|DT647663.1|DT647663
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|71435282|gb|DR816332.1|DR816332
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|50328983|gb|CO524109.1|CO524109
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|71773101|gb|DR971019.1|DR971019
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|149097127|gb|EE182939.2|EE182939
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|37426517|gb|CF651015.1|CF651015
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|33467672|gb|CF244721.1|CF244721
EST:     AGAACAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|211033504|gb|FL333366.1|FL333366
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|149111107|gb|EE294603.2|EE294603
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|149058763|gb|EE156781.2|EE156781
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|71322554|gb|DR797954.1|DR797954
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|148971891|gb|EE022659.2|EE022659
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|78114034|gb|DV532423.1|DV532423
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|71775245|gb|DR973123.1|DR973123
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|89757906|gb|DY687292.1|DY687292
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|211111363|gb|FL325867.1|FL325867
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|149011246|gb|EE042332.2|EE042332
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|78107802|gb|DV526220.1|DV526220
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
EST: gi|148949267|gb|EC894710.2|EC894710
EST:     AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAG                         GCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC
genomic: AGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctaca ... aatggaccagGCCTTCTACTATGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGGTGGTGGACAGGAACATCCTCCCCTACTGCAGCATCGACAGGAAGCAGAAGAAGACGCTGGGAGAGATGGAGCAGGAGTTCCTGCAAGCCCTCCAGgtaccctacaacaaggacatgattttcagcttctttgatatgatttcgcttcacgtctcatcattgatcgccccccccctccaatggaccag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG