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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaatactctgattgcagttgccatcctttgtacatgtccatgctaattgattctcagggaaaaaaaactgtcgccaggcttagaccaagcaatt...

Basic information

species Zea mays
transcript GRMZM5G893252_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 5'ss of exon 2
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaatactctgattgcagttgccatcctttgtacatgtccatgctaattgattctcagggaaaaaaaactgtcgccaggcttagaccaagcaatt-------
|||||||||| ||||| |||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||||||  |    |||| ||| |  |   ||  |     |  |     | |||||| |     |||||  |   | | |    | ||||  |    ||  ||       
TCTTCGACGGTTACGCCCACCTCTCCTCCGGTCTCGCCTGCGGCCTCGCCGGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccct--ccctctcattcccctcctcagtccc---atctactactactaatt-acaacaagggagtagttattattattaagctttcaatt-gctgttagcctgc

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g34510.1 (Oryza sativa), 5'ss of exon 1
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgt-actgtaatactctgattgcagttgcc-atcctttgtacatgtccatgctaattgattctcagggaaaaaaaactgtcgccaggcttagaccaagcaatt
||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||| || |||| |     || |    ||  |     || |   | |||  |      |  | ||      |     | || |  | |     ||| | | |      || |
TCTTCGACGGCTACGCGCACCTCTCCTCCGGCCTCGCGTGCGGCCTCGCCGGCCTCGCCGCCGGGATGGCCATCGGCATCGTCGGCGACGCCGGCGTCAGgttatccccatcccgaaatcccccccacccaaaatgtgt-taaactttttttgatgtggatttgttaataatactccggaatgagg-taaaattgctgaact

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaatactctgattgcagttgccatcctttgtacatgtc-catgct-aattgattctcagggaaaaaaaactgtcgccaggctta-gaccaagcaatt
|||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| | || ||||||||||| ||||| || || || ||||| |||||||| | | |  |  |   |    ||    | |||| ||| | |  |||| |  | | |    |    |   | || | |   |  || || |   | | |   
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta---

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G05630.1 (Glycine max), 5'ss of exon 2
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaatactctgattgcagttgccatcctttgtacatgtccatgctaattgattctcagggaaaaaaaact--gtcgccaggct--tagaccaagcaatt--
|||| ||||| |||||||||||||| || || ||||| || ||||||||||||||| | || |||||||||||||||||||| || || ||||| |||||||| |  |  | ||  ||| || |   ||  ||| | |  |||   ||||  || || ||      ||      |   | |    |||  |       | ||||  
TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtatt-catcattcaaatt-caat---caagcttcg-agttgttgctgctgctttatgctttcactaatgctgtttgattgatgtgctggtgtgttttgtaattca

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G23990.1 (Glycine max), 5'ss of exon 2
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgta-ctgtaat--actctgattgcagttgccatcctttgtaca--tgtccatgctaattgattctcagggaaaaaaaactgtcgccaggcttagaccaagcaatt
|||| || ||||| || ||| | ||||| || |||||||| ||||||||||||||| |||| || |||||||| || || || || || || || || |||||  ||| ||  | | | |||    |   ||| |  ||||    | |  |  ||  |||| | | |||   |  ||    | |  |   ||| |   |      
TCTTTGATGGCTATGCCCACTTGTCCTCTGGCCTCGCCTGTGGCCTCGCTGGCCTCTCTGCTGGAATGGCCATTGGGATTGTTGGTGATGCTGGTGTCAGgtaattgttattcattttcattatcatgatcatgccatgtatgcctatggacacttcttgaatgttaggtgtagtaagtgttggagatctttatattgat-----

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G24220.1 (Glycine max), 5'ss of exon 2
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaatactctgattgcagt-tgccatcctttgtacatgtccatgctaattgattc--tcagggaaaaaaaactgtcgccaggct--tagaccaagcaatt
| || ||||||||||| |||||||| || || ||||| || ||||||||||||||| | || |||||||||||||||||||| || || ||||| |||||||| |  |  | |   |||  |   |||      || |   ||    ||||   || ||   | |  |    |    ||| |   || |  | |    ||     
TTTTTGACGGCTACGCCCACCTCTCTTCAGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtatt-catcatttaaatttaatcatgcttcgagttattgttgctgctgctttatgttttcattaatgttgcatgcttgttgtttggttgatgggttgagt----

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaatactctgattgcagttgccatcctttgt-----acatgtccatgctaat--tgattctcagggaaaaaaaactgtcgccaggcttagaccaagcaatt
|||||||||||||||| |||||||||||||| ||| | ||||| || ||||||||| | || ||||||||||| ||||| || || |||||||| |||||||| | | |  |  |   | |  |  |  |   ||       | |||    |  | ||  | ||| ||  | | |       ||     |    || |||       
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagttataattattttcttgcatatggtttggtatttggttcaaggcca-------

upper sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ37480 (Selaginella moellendorffii), 5'ss of exon 2
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgt---actgtaatactctgattgcagttgccatcctttgtacatgtccatgctaattgattctcagg-gaaaaaaaactgtcgccaggcttagaccaagcaatt
||||||| ||||||||||| ||||| |||||| | || ||||| || ||||||||| | || || ||||| || || || || |||||||| ||||| ||||     |   | |||||   | | |||    | ||| | | | || || |||  | ||   ||  | |       ||| || ||||  ||||  |||  ||  
TCTTCGATGGCTACGCGCATCTCTCTTCCGGATTGGCTTGCGGGCTTGCTGGCCTCTCGGCTGGGATGGCGATTGGAATTGTTGGAGACGCTGGAGTGAGgtcaagtttccaaactctttcttc-gttttgctgcttcgaata-gttcacgcttgtagacggtcgagtgtctgctgactatctccagctttagctcaactaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78027136|gb|DV495523.1|DV495523
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|13490788|gb|BG517552.1|BG517552
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|149042118|gb|EE047097.2|EE047097
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|148966811|gb|EE017912.2|EE017912
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|33770901|gb|CF273195.1|CF273195
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|4886147|gb|AI677267.1|AI677267
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|149105528|gb|EE291060.2|EE291060
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|5740596|gb|AI948286.1|AI948286
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAAACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|211284417|gb|FL293351.1|FL293351
EST:     GCCTCGCTGCCGGCATGNGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GCCTCGCTGCCGGCATG-GCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|148933206|gb|EC876854.2|EC876854
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|78026692|gb|DV495079.1|DV495079
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|37388597|gb|CF631508.1|CF631508
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|12970771|gb|BG267150.1|BG267150
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|211284415|gb|FL293349.1|FL293349
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|32869037|gb|CF008719.1|CF008719
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|32912514|gb|CF017326.1|CF017326
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|211284416|gb|FL293350.1|FL293350
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|37395233|gb|CF634896.1|CF634896
EST:     GGCCTCGCTGCCGGCATGGCCATAGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|16917970|gb|BM073518.1|BM073518
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|5740183|gb|AI947873.1|AI947873
EST:     CGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: CGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|9794351|gb|BE552659.1|BE552659
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|211494946|gb|FL444512.1|FL444512
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|71758217|gb|DR956154.1|DR956154
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|18177645|gb|BM378855.1|BM378855
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|211383591|gb|FL452874.1|FL452874
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|60399941|gb|DN232748.1|DN232748
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|6695950|gb|AW289058.1|AW289058
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACACCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|110544375|gb|EE047096.1|EE047096
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGGGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTTTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|67010333|gb|CO439082.1|CO439082
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|211284413|gb|FL293347.1|FL293347
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|32803336|gb|CD955572.1|CD955572
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|211494947|gb|FL444513.1|FL444513
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|32801030|gb|CD953266.1|CD953266
EST:     GGCCTCGCTGCCGGCACGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|12970106|gb|BG266817.1|BG266817
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|148951810|gb|EC897573.2|EC897573
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
EST: gi|148951809|gb|EC897572.2|EC897572
EST:     GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAG                         GGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT
genomic: GGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 98

TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTATCTTCGCAGAAGCTCTTGCTCTGTACGGTCTCATCGTCGGTATCATTCTC


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 92

TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTATCTTCGCAGAAGCTCTTGCTCTGTACGGTCTCATCGTCGGTATCATTCTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 66

TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTATCTTCGCAGAAGCTCTTGCTCTGTACGGTCTCATCGTCGGTATCATTCTC


Block sizes: 46 (upstream exon), 48 (downstream exon)
Score: 110

TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaat ... tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTATCTTCGCAGAAGCTCTTGCTCTGTACGGTCTCATCGTCGGTATCATTCTC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaatactctgattgcagttgccatcctttgtacatgtccatgctaattgattctcagggaaaaaaaactgtcgccaggcttagaccaagcaatt

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