1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TATGATGGAAGAAGGCATGGGAAATGTTCATGTTGCTCTTCGATACTTGCATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAGgtgaaagaagctaaattatatcctttattttccaaagtgtcgtatgattgtagccattgaattatctttgcaaactaaagaacttctaaggtgtaaaggt...
species | Zea mays |
transcript | GRMZM5G892758_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAG ACTTCTGCAAGCTACCATGCTATAGCCATAGCCCTTTCAATGATGGATGCGEST: gi|211396987|gb|FL123374.1|FL123374
genomic: ATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAGgtgaaagaag ... aatcaatcagACTGCTGCAAGCTACCATGCTATAGCCATAGCCCTTTCAATGATGGATGCG
EST: ATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAG ACTTCTGCAAGCTACCATGCTATAGCCATAGCCCTTTCAATGATGGATGCGEST: gi|211396984|gb|FL123371.1|FL123371
genomic: ATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAGgtgaaagaag ... aatcaatcagACTGCTGCAAGCTACCATGCTATAGCCATAGCCCTTTCAATGATGGATGCG
EST: ATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAG ACTTCTGCAAGCTACCATGCTATAGCCATAGCCCTTTCAATGATGGATGCGEST: gi|6564224|gb|AW231846.1|AW231846
genomic: ATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAGgtgaaagaag ... aatcaatcagACTGCTGCAAGCTACCATGCTATAGCCATAGCCCTTTCAATGATGGATGCG
EST: ATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAG ACTGCTGCAAGCTACCATGCTATAGCCATAGCCCTTTCAATGATGGATGCG
genomic: ATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAGgtgaaagaag ... aatcaatcagACTGCTGCAAGCTACCATGCTATAGCCATAGCCCTTTCAATGATGGATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGATGGAAGAAGGCATGGGAAATGTTCATGTTGCTCTTCGATACTTGCATGAAGCCCTGAAGTGCAATAAGAGGTTGCTAGGAGCTGATCACATCCAGgtgaaagaagctaaattatatcctttattttccaaagtgtcgtatgattgtagccattgaattatctttgcaaactaaagaacttctaaggtgtaaaggt
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaagaa