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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAACGGAGgttagtcagtgacccctccacctgcagtcagagcttattagctcatttttttcatgcaataatcagcaatcatgtggttcctcgctcgtcctccgtggtc...

Basic information

species Zea mays
transcript GRMZM5G879749_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94479697|gb|EB708655.1|EB708655
EST:     CTCTGGCTCAACGGAG                         GTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
genomic: CTCTGGCTCAACGGAGgttagtcagt ... gcactggcagGTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
EST: gi|91050418|gb|EB160836.1|EB160836
EST:     CACACCTTTCTCTGGCTCAACGGAG                         GTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
genomic: CACACCTTTCTCTGGCTCAACGGAGgttagtcagt ... gcactggcagGTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
EST: gi|101395266|gb|EB819563.1|EB819563
EST:     CTCTGGCTCAACGGAG                         GTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
genomic: CTCTGGCTCAACGGAGgttagtcagt ... gcactggcagGTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
EST: gi|71775053|gb|DR972931.1|DR972931
EST:     CTCTGGCTCAACGGAG                         GTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT
genomic: CTCTGGCTCAACGGAGgttagtcagt ... gcactggcagGTCCTGGATGCTCGTCGGTGGCGTATGGAGCGTCGGAGGAGATCGGCCCGT