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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCCAATCACGTCCCTGTTCCCCTTCCTCTACTTCATGgtaagcctgcctgtctgcctgcctgccattctttctgttgctctgaaatcatccgtgcattttctttctttttatttggcaagggactttccttctcttttctttctcctaatttatagtggtgaccaaacag

Basic information

species Zea mays
transcript GRMZM5G877788_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G877788_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g03860.2 (Oryza sativa), 5'ss of exon 2
CTCTGCCAATCACGTCCCTGTTCCCCTTCCTCTACTTCATGgtaagcctgcctgtctgcctgcctgccattctttctgttgctctgaaatcatccgtgcattttctttctttttatttggcaagggactttccttctcttttctttctcctaatttatagtggtgaccaaacag
||||||||||| | ||| ||||||||||||| ||||||||||||||  |    || | | |||     ||||  |||  |    |||||       |  ||||| |              |||  |    ||  ||  || |||| |||   |                     
CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagttta---gtttccatgc-----attccatctaatttcatgaaaa-----atatatttttt-------------acaaaaggtactcgatccattctctt-ctctagagcag-----------------

upper sequence: GRMZM5G877788_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g03860.3 (Oryza sativa), 5'ss of exon 2
CTCTGCCAATCACGTCCCTGTTCCCCTTCCTCTACTTCATGgtaagcctgcctgtctgcctgcctgccattctttctgttgctctgaaatcatccgtgcattttctttctttttatttggcaagggactttccttctcttttctttctcctaatttatagtggtgaccaaacag
||||||||||| | ||| ||||||||||||| ||||||||||||||  |    || | | |||     ||||  |||  |    |||||       |  |||||      ||  |   || |   ||  | | ||||||| |||                              
CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagttta---gtttccatgc-----attccatctaatttcatgaaaa-----atatatttt------ttacaaaaggtactcga--tccattctcttctctag----------------------------

upper sequence: GRMZM5G877788_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g04030.1 (Oryza sativa), 5'ss of exon 2
CTCTGCCAATCACGTCCCTGTTCCCCTTCCTCTACTTCATGgtaagcctgcctgtctgcctgcctgccattctttctgttgctctgaaatcatccgtgcattttctttctttttatttggcaagggactttccttctcttttctttctcctaatttatagtggtgaccaaacag
||||||||||| | ||| ||||||||||| | ||||||||||||||  |     ||| | ||| | ||||||  | |       |||||     | |  |||||               ||||  ||   |   |   ||  |||  |   ||                     
CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagttta---atctccatgcattccattcaattt-----catgaaa-----catatatttt---------------gcaaaagatactaaatgcattcccttctttacaacag------------------