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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAATTGGAGGAGATACCATATCCGTGACAAGTGGAGTGGTCTCTAGGATAGAAATGCTTTTATATGTTCATGGTTCTATAGAACTTCTAGGATTGCAGgtacatttttttctgaaattatgataacttcaaataaatctttttataaagatagatgttgcaagtgaagtaaatattttgagaaatcatgacttatcggctcaccgacgtgtctaataccttgtcttgttaatag

Basic information

species Zea mays
transcript GRMZM5G877597_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G877597_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 2
TCCAATTGGAGGAGATACCATATCCGTGACAAGTGGAGTGGTCTCTAGGATAGAAATGCTTTTATATGTTCATGGTTCTATAGAACTTCTAGGATTGCAGgtacatttttttctgaaattatgataacttcaaataaatctttttataaagatag-atgttgcaagtgaagtaaatattttgagaaatcatgacttatcggctcaccgacgtgtctaataccttgtcttgttaatag
||||||||||||||| || ||||| ||||||||||| |||||||| |||||||| || |||| ||||||||| ||||||| ||||||||||||||||||||| |||||| | |  | |  ||  | | ||  ||||    | | | | | ||||  ||||||  |    | ||| | |||| |    |   |  |||| | |                                   
TCCAATTGGAGGAGACACAATATCTGTGACAAGTGGGGTGGTCTCCAGGATAGAGATACTTTCATATGTTCACGGTTCTACAGAACTTCTAGGATTGCAGgttcattttctccccaca--attctcatttagaatagtattatctgtgaggataacatgttgagaaatca-taagtcttttaacttttggggttttatggacag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71431610|gb|DR812660.1|DR812660
EST:     TAGAAATGCTTTTATATGTTCATGGTTCTATAGAACTTCTAGGATTGCAG                         ATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
genomic: TAGAAATGCTTTTATATGTTCATGGTTCTATAGAACTTCTAGGATTGCAGgtacattttt ... ttgttaatagATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
EST: gi|94472958|gb|EB701916.1|EB701916
EST:     GTTCATGGTTCTATAGAACTTCTAGGATGGCAG                         ATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTCTTAATGAT
genomic: GTTCATGGTTCTATAGAACTTCTAGGATTGCAGgtacattttt ... ttgttaatagATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
EST: gi|71311298|gb|DR791964.1|DR791964
EST:     TAGAAATGCTTTTATATGTTCATGGTTCTATAGAACTTCTAGGATTGCAG                         ATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
genomic: TAGAAATGCTTTTATATGTTCATGGTTCTATAGAACTTCTAGGATTGCAGgtacattttt ... ttgttaatagATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
EST: gi|74246237|gb|DT654151.1|DT654151
EST:     TAGAAATGCTTTTATATGTTCATGGTTCTATAGAACTTCTAGGATTGCAG                         ATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT
genomic: TAGAAATGCTTTTATATGTTCATGGTTCTATAGAACTTCTAGGATTGCAGgtacattttt ... ttgttaatagATAGATGCAGCTATTAATTCAGGAAATTCAGGTGGCCCAGCTTTTAATGAT