1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGAGCTGAATCTTCTCCTGATGGGGGTTTATTGACTAACCAGAATGATGCATCATTTTCTACGGAGAGGCTTAGAAATCGCATGCACGAGGAAGGCCTTGgtgaggaaataattaaagactgtgaacagattgtccattcagaattctcacagtatcacacacag
species | Zea mays |
transcript | GRMZM5G875564_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCATTTTCTACGGAGAGGCTTAGAAATCGCATGCACGAGGAAGGCCTTG ATGAAACAACGCTGTGAAGAATATGTAAGCTTTCTCAGCAGGCTTCCACAGEST: gi|211178687|gb|FL100546.1|FL100546
genomic: ATCATTTTCTACGGAGAGGCTTAGAAATCGCATGCACGAGGAAGGCCTTGgtgaggaaat ... tcacacacagATGAAACAACGCTGTGAAGAATATGTAAGCTTTCTCAGCAGGCTTCCACAG
EST: ATCATTTTCTACGGAGAGGCTTAGAAATCGCATGCACGAGGAAGGCCTTG ATGAAACAACGCTGTGAAGAATATGTAAGCTTTCTCAGCAGGCTTCCACAGEST: gi|211178684|gb|FL100543.1|FL100543
genomic: ATCATTTTCTACGGAGAGGCTTAGAAATCGCATGCACGAGGAAGGCCTTGgtgaggaaat ... tcacacacagATGAAACAACGCTGTGAAGAATATGTAAGCTTTCTCAGCAGGCTTCCACAG
EST: ATCATTTTCTACGGAGAGGCTTANAAATCGCATGCACGAGGAAGGCCTTG ATGAAACAACGCTGNGAAGAATATGAAAGCTTTCCTCAGCAEST: gi|211178685|gb|FL100544.1|FL100544
genomic: ATCATTTTCTACGGAGAGGCTTAGAAATCGCATGCACGAGGAAGGCCTTGgtgaggaaat ... tcacacacagATGAAACAACGCTGTGAAGAATATGTAAGCTTTC-TCAGCA
EST: ATCATTTTCTACGGAGAGGCTTAGAAATCGCATGCACGAGGAAGGCCTTG ATGAAACAACGCTGTGAAGAATATGTAAGCTTTCTCAGCAGGCTTCCACAG
genomic: ATCATTTTCTACGGAGAGGCTTAGAAATCGCATGCACGAGGAAGGCCTTGgtgaggaaat ... tcacacacagATGAAACAACGCTGTGAAGAATATGTAAGCTTTCTCAGCAGGCTTCCACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGCTGAATCTTCTCCTGATGGGGGTTTATTGACTAACCAGAATGATGCATCATTTTCTACGGAGAGGCTTAGAAATCGCATGCACGAGGAAGGCCTTGgtgaggaaataattaaagactgtgaacagattgtccattcagaattctcacagtatcacacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG