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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGGCTGTCCTTGTTCTACGTCCCGACACTGGTCGTGCTGCCGCTCGCCGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatgagtccttttcatcgcgtatatatatatatatgctgtcgggatcttctgtgctagccgttatgtttagctattcatgggatgtgaaactactttttcag

Basic information

species Zea mays
transcript GRMZM5G873519_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G873519_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g32830.2 (Oryza sativa), 5'ss of exon 2
AGGTGGCTGTCCTTGTTCTACGTCCCGACACTGGTCGTGCTGCCGCTCGCCGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatgagtccttttcatcgcgtatatatatatatatgctgtcgggatcttctgtgctagccgttatgtttagctattcatgggatgtgaaactactttttcag---
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AGGTGGCTGCCCCTCTTCTACGTCCCTTCCCTGGTCGTCCTGCCGCTCGCCGTCAGGGACGTCCCGGCTGCTTCCGGCCTCAAGATCTTCCTCATCATTTgtatgcaca--------tcactacgctcctatcgttgcatgcattctgctacttctttcttcctcctgatcatcg--tgcttatctgctccgcctctgcttcctccggat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78076172|gb|DV504606.1|DV504606
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: gi|74234749|gb|DT642663.1|DT642663
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGC
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGC
EST: gi|149099738|gb|EE185791.2|EE185791
EST:     GTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGNCA-TCACTT                         TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCC
genomic: GTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTG-CAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCC
EST: gi|211339842|gb|FL096305.1|FL096305
EST:     GTCGGGGATATTC-AGCGGNCTCAGGAATCAAGATCCTTGGCAATCACTT                         T-GGNGGGCTGGTTTGCTACCCTGACGGTGGCAGGAATATACAGTGT-AGC
genomic: GTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTG-CAATCACTTgtatgaatga ... actttttcagTTGGTGG-CTGGTTTGCTACCCTGACGGTGGCAGGA-TATACAGTGTTAGC
EST: gi|211337449|gb|FL096295.1|FL096295
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGGTGGCTGGGTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCC
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGG-TGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCC
EST: gi|211457241|gb|FL096396.1|FL096396
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGTGGCTGGGTTGCTACCCTGAACG-TGGCAGGATATACAGTGTTAGCC
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGA-CGGTGGCAGGATATACAGTGTTAGCC
EST: gi|211315102|gb|FL381332.1|FL381332
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: gi|211347036|gb|FL096350.1|FL096350
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGTGGCTGGTTTGCTACCCTGACGGT
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGT
EST: gi|76285948|gb|DV025516.1|DV025516
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: gi|211351847|gb|FL096379.1|FL096379
EST:     GTCGGGGATATTC-AGCGGCCTCCAGGA-TCAAGA-CCTTGCAATCACTT                         TTG-TGGCTTGGTT
genomic: GTCGGGGATATTCCAGCGGCCTC-AGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCT-GGTT
EST: gi|211349436|gb|FL096363.1|FL096363
EST:     GTCGGGGATATTC-AGCGGCCTCAGGAAATCA-GATCCNTGCAATCACTT                         TTGGTGGCTGGGTTGCTACCCTGACGGTGGCAGG
genomic: GTCGGGGATATTCCAGCGGCCTCAGGAA-TCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGG
EST: gi|211342240|gb|FL096324.1|FL096324
EST:     GTCGGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTTGGTGGGCTGGTT-GCTACCCTG
genomic: GTCGGGG-ATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTT-GGTGG-CTGGTTTGCTACCCTG
EST: gi|211200162|gb|FL429646.1|FL429646
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: gi|74241098|gb|DT649012.1|DT649012
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: gi|211231751|gb|FL386173.1|FL386173
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: gi|211347026|gb|FL096340.1|FL096340
EST:     GTCCGGGGATATTC-AGCGGGCTCAGGAATCA-GATCCTTGCAATCACTT                         TTGGTGGCTGGGTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
genomic: GTC-GGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: gi|91875592|gb|EB405549.1|EB405549
EST:     CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT                         TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA