1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGAGGAGAAGACTTTAATTACCCCTGTGCAGTGCAAAAATTTGTGGAGGCAATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAGgtatctccacatttccattccaccagttaactgatatgtgtgctattgacaccttgtggatttcatctcaaaatccctctattttgtttattactcaatactcatgattttcttgggaagtgggactggttcacttaattagagacgatctatctgctaaacattactgttgccttgatcag
species | Zea mays |
transcript | GRMZM5G873287_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAG GAAGCAAATAAGAGGAACAACAACTGGCTACCACCTCCATGGGCACTTGCTEST: gi|29130328|gb|CB381032.1|CB381032
genomic: AATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAGgtatctccac ... ccttgatcagGAAGCAAATAAGAGGAACAACAACTGGCTACCACCTCCATGGGCACTTGCT
EST: AATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAG GAAGCAAATAAGAGGAACAACAACTGGCTACCACCTCCATGGGCACTTGCTEST: gi|6859862|gb|AW355856.1|AW355856
genomic: AATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAGgtatctccac ... ccttgatcagGAAGCAAATAAGAGGAACAACAACTGGCTACCACCTCCATGGGCACTTGCT
EST: AATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAG GAAGCAAATAAGAGGAACAACAACTGGCTACCACCTCCATGGGCACTTGCTEST: gi|60397891|gb|DN230707.1|DN230707
genomic: AATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAGgtatctccac ... ccttgatcagGAAGCAAATAAGAGGAACAACAACTGGCTACCACCTCCATGGGCACTTGCT
EST: AATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAG GAAGCAAATAAGAGGAACAACAACTGGCTACCACCTCCATGGGCACTTGCT
genomic: AATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAGgtatctccac ... ccttgatcagGAAGCAAATAAGAGGAACAACAACTGGCTACCACCTCCATGGGCACTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGAGAAGACTTTAATTACCCCTGTGCAGTGCAAAAATTTGTGGAGGCAATTCAAGGCTGAAACTGAATATACAGTGACTCAAGCCTTAGCTGCTCAGgtatctccacatttccattccaccagttaactgatatgtgtgctattgacaccttgtggatttcatctcaaaatccctctattttgtttattactcaatactcatgattttcttgggaagtgggactggttcacttaattagagacgatctatctgctaaacattactgttgccttgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT