Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAGTAGGCGGCTCCTGCTGCTTCGGCGGTCCCTAATCCCTCTCTCGGCAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactccaaatcaaccaaccataccatttcttcgcttccctattttcttcttctttctgatgctctcccctgcttctgcag

Basic information

species Zea mays
transcript GRMZM5G872417_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352709|gb|DN219682.1|DN219682
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|78545121|gb|DV622619.1|DV622619
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATTTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|60346643|gb|DN213616.1|DN213616
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|60338206|gb|DN205179.1|DN205179
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211067480|gb|FL117500.1|FL117500
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACC
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACC
EST: gi|93011979|gb|EB637499.1|EB637499
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|32908532|gb|CF013345.1|CF013345
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064740|gb|FL117481.1|FL117481
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCCTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211478436|gb|FL475434.1|FL475434
EST:     GCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: GCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064748|gb|FL117489.1|FL117489
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAKCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACAT
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACAT
EST: gi|211119264|gb|FL172295.1|FL172295
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|31405969|gb|CD484701.1|CD484701
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064737|gb|FL117478.1|FL117478
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGAC-                         AGGTCATCTCCGTCATCA
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCA
EST: gi|211067485|gb|FL117505.1|FL117505
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGARCCGCTCGTCGACC                         AGGTCATCTCC
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCC
EST: gi|211118481|gb|FL172294.1|FL172294
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|88757353|gb|DY541494.1|DY541494
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|26456923|gb|CA828506.1|CA828506
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|9254635|gb|BE345103.1|BE345103
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|60348947|gb|DN215920.1|DN215920
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064744|gb|FL117485.1|FL117485
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTGCATCACCAACGATGGCCGCAACATCGTGGGTACGCTC
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGT-CATCACCAACGATGGCCGCAACATCGTGGGTACGCTC
EST: gi|211070213|gb|FL117508.1|FL117508
EST:     CAGTGTACAGATGGCGTCCGGSGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCCTCATCACCAACGATGGCCGCAACATCGTN
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|9254766|gb|BE345234.1|BE345234
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064741|gb|FL117482.1|FL117482
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211119267|gb|FL172298.1|FL172298
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064742|gb|FL117483.1|FL117483
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211067474|gb|FL117494.1|FL117494
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064747|gb|FL117488.1|FL117488
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGC-GCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGAT
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGAT
EST: gi|26456102|gb|CA827685.1|CA827685
EST:     AGTGTACAGATGGCGTCCGGCGGTCCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGCG
genomic: AGTGTACAGATGGCGTCCGGCGGT-CCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064749|gb|FL117490.1|FL117490
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|20811135|gb|BQ295613.1|BQ295613
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211067475|gb|FL117495.1|FL117495
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCCTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211067476|gb|FL117496.1|FL117496
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|78544371|gb|DV621869.1|DV621869
EST:     CAGTGTACAGATGGCGTCCGGCGTTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064743|gb|FL117484.1|FL117484
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064746|gb|FL117487.1|FL117487
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGC-GCTCGTCGACC                         AGGTCATCTCCGT
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGT
EST: gi|211119265|gb|FL172296.1|FL172296
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211119266|gb|FL172297.1|FL172297
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211067478|gb|FL117498.1|FL117498
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCAC-AACGATGGCCGC
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGC
EST: gi|211067477|gb|FL117497.1|FL117497
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGC-GCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATC
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATC
EST: gi|31557971|gb|CD527183.1|CD527183
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|5343084|gb|AI795494.1|AI795494
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|23199819|gb|BU582384.1|BU582384
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|78544396|gb|DV621894.1|DV621894
EST:     AGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: AGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211064745|gb|FL117486.1|FL117486
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAAC
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAAC
EST: gi|17930348|gb|BM267308.1|BM267308
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|45567457|gb|CK985581.1|CK985581
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|37378013|gb|CF625658.1|CF625658
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211067473|gb|FL117493.1|FL117493
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211070212|gb|FL117507.1|FL117507
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|60358027|gb|DN225000.1|DN225000
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG
EST: gi|211475595|gb|FL117474.1|FL117474
EST:     CAGTGTACAGATGGCGTCCGGCGGTSCGGSGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCCTCATCACCAACGATGGCCGCAACATCGT
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGT
EST: gi|211064750|gb|FL117491.1|FL117491
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCCTCATCACCAACGATGGCCGCAACATCGT
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGT
EST: gi|211475593|gb|FL117472.1|FL117472
EST:     CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACC                         AGGTCATCTCCCTCATCACCAACGATGGCCGCAACATCGTG
genomic: CAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 41 (downstream exon)
Score: 165

GTCCAGTAGGCGGCTCCTGCTGCTTCGGCGGTCCCTAATCCCTCTCTCGGCAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG


Block sizes: 46 (upstream exon), 41 (downstream exon)
Score: 54

GTCCAGTAGGCGGCTCCTGCTGCTTCGGCGGTCCCTAATCCCTCTCTCGGCAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG


Block sizes: 46 (upstream exon), 41 (downstream exon)
Score: 82

GTCCAGTAGGCGGCTCCTGCTGCTTCGGCGGTCCCTAATCCCTCTCTCGGCAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG


Block sizes: 46 (upstream exon), 41 (downstream exon)
Score: 55

GTCCAGTAGGCGGCTCCTGCTGCTTCGGCGGTCCCTAATCCCTCTCTCGGCAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactc ... gcttctgcagAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCAGTAGGCGGCTCCTGCTGCTTCGGCGGTCCCTAATCCCTCTCTCGGCAGTGTACAGATGGCGTCCGGCGGTCCGGCGCTCGAGCCGCTCGTCGACCgtcagtactccaaatcaaccaaccataccatttcttcgcttccctattttcttcttctttctgatgctctcccctgcttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG