Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCATGGTGGTCTCCAGCGCCGGCCTCCGCGTGCGCGTGCTCGGCTGGATCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATGgcacgtatctaatttaatctctctctctctctctctctctctctctctctctctctctctgaagagggatgtgaattgttggaaccgccattaattcgctgactgccctatctacatctactttcctgcag

Basic information

species Zea mays
transcript GRMZM5G872392_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872392_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g30910.1 (Oryza sativa), 5'ss of exon 3
CACCATGGTGGTCTCCAGCGCCGGCCTCCGCGTGCGCGTGCTCGGCTGGATCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATGgcacg-tatctaatttaatctctctctctctctctctctctc-tctctctctctctctctctgaagagggatgtgaattgttggaaccgccattaattcgctgactgccctatctacatctactttcctgcag
|||  || || ||||| ||| ||  |||||||| | ||| ||||||||||||||||||  |||| |||||||||| |||||||| ||  | |||||||| | | | || | ||   |  |  |||   | |||  ||  ||  || |||  ||  ||   | | ||  |      |  |  ||          |  || || |                              
CACGCTGCTGCTCTCCCGCGGCGAGCTCCGCGTCCACGTCCTCGGCTGGATCTGCGTCGCCGTCTCGCTCAGCGTCTTCGCCGCTCCCTTGAGCATCATCgtaagctagcaaacgaatgcaatcttgatgtcttgctaactaatcgctcgatcgatcaaccagcagctgatgacaaggttctgatgattgttgtgttttgcag------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76932560|gb|DV173072.1|DV173072
EST:     TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATG                         CGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGTTCTCC
genomic: TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATGgcacgtatct ... tttcctgcagCGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
EST: gi|78107297|gb|DV525715.1|DV525715
EST:     TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATG                         CGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATGgcacgtatct ... tttcctgcagCGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
EST: gi|78078045|gb|DV506460.1|DV506460
EST:     TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATG                         CGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATGgcacgtatct ... tttcctgcagCGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
EST: gi|78112515|gb|DV530909.1|DV530909
EST:     TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATG                         CGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATGgcacgtatct ... tttcctgcagCGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
EST: gi|91052897|gb|EB163315.1|EB163315
EST:     TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATG                         CGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATGgcacgtatct ... tttcctgcagCGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
EST: gi|71442764|gb|DR823814.1|DR823814
EST:     TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATG                         CGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATGgcacgtatct ... tttcctgcagCGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
EST: gi|149098019|gb|EE183966.2|EE183966
EST:     TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATG                         CGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC
genomic: TCTGCGTCAGCGTCGCGCTCAGCGTATTCGCCGCGCCGCTCAGCATCATGgcacgtatct ... tttcctgcagCGGCAGGTGGTCCGGACCAAGAGCGTGGAGTTCATGCCCATCTCGCTCTCC