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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAGgtgtgatgatcaattccagctagaattctattgcgagcttattttctgagtagcatgcttggatttggtgttaaaattggtgggagtagctgttctgttg...

Basic information

species Zea mays
transcript GRMZM5G871861_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G871861_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g10340.1 (Oryza sativa), 5'ss of exon 2
GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAGgtgtgatgatcaattccagctagaattctattgcgagcttattttctgagtagcatgcttggatttggtgttaaaattggtgggagtagctgt-tctgttg-----
||||||||||| ||||||  |||||| ||||||||||| ||||||||   | ||||  |  |     |  ||   |  |||     | | |||| |   |   |     |  ||  |  | ||| | |  |   |||  |||| |      
GAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGgt---acgatcgttctcgtacggtgtttcgtgacgaatgcttgtcctgaatgttacttt---gctgagtactttacttgattgaggattctgaatctgctaatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211149058|gb|FK958475.1|FK958475
EST:     GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAG                         ATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
genomic: GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAGgtgtgatgat ... tgctcagcagATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
EST: gi|22546278|gb|BU098589.1|BU098589
EST:     GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAG                         ATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
genomic: GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAGgtgtgatgat ... tgctcagcagATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
EST: gi|149004383|gb|EE039059.2|EE039059
EST:     GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAG                         ATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
genomic: GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAGgtgtgatgat ... tgctcagcagATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
EST: gi|13557642|gb|BG548998.1|BG548998
EST:     GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAG                         ATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
genomic: GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAGgtgtgatgat ... tgctcagcagATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
EST: gi|78113561|gb|DV531952.1|DV531952
EST:     GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAG                         ATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
genomic: GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAGgtgtgatgat ... tgctcagcagATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
EST: gi|71449411|gb|DR830461.1|DR830461
EST:     GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAG                         ATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
genomic: GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAGgtgtgatgat ... tgctcagcagATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
EST: gi|149001459|gb|EE038760.2|EE038760
EST:     GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAG                         ATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT
genomic: GAGATCCAGGCAGTGCTCGTGTTCCTGGTGCTCTTCGTAGTGAAGgtgtgatgat ... tgctcagcagATTGTGAAAGAGGAAACCTGGGAAGCAGTAATTGCTGACTCGTTGCTTTAT