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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACTCATTCCAGCTCATATCAAGGGAAGGCCACCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGTTGTGTCTGTTCCATATCTTCGGTCTGAGgtatgatgtccttcttctcctctgttgtttaggttaagtatggaataaccgaggcagtaaatctttccatatctgttttcttgcttgctcacttctgact...

Basic information

species Zea mays
transcript GRMZM5G868913_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868913_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g12780.1 (Oryza sativa), 5'ss of exon 5
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCACCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGTTGTGTCTGTTCCATATCTTCGGTCTGAGgtatgatgtccttcttctcctctgttgtttaggttaagtatggaataaccgaggcagtaaatctttccatatctgttttcttgcttgctcacttctgact---
||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || ||||||||||| |||| |    ||  ||     |||| ||     ||  ||||| | ||  | || ||| ||    |  |||    ||        ||| |||      
AAGACTCATTCCAGCTCATATAAAGGGCAGGCCACCATCATATTACATTGTTGCAGGCTTCGTTTTTATGGTTGTTTCTGTTCCATATCTCCGATCTGAGgtatgctgtcatctcccttgtccagc-tttatgtgtgaaat--aataatcaagatattacatccttgttcagttgtcaatttttcattctactactgtacgat

upper sequence: GRMZM5G868913_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 5
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCACCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGTTGTGTCTGTTCCATATCTTCGGTCTGAGgtatgatgtccttcttctcctctgttgtttaggttaagtatggaataaccgag-gcagtaaatctttccatatctgtt-ttcttgcttgctcacttctgact--
||| || |||||||| || | |||||| | ||| || |||||||| ||| ||||||| ||||||||||    ||| || |||||||||||||| ||||||||    || |       || ||  | |      ||||  ||  | | |    | |   ||  | || |  | | | ||  | ||| |        ||||  |  
AAGGCTTATTCCAGCACACAGCAAGGGCAAGCCTCCCTCATATTATATTATTGCTGGATTTGTTTTTACAACTGTTTCGGTTCCATATCTTCGTTCTGAGgt-cagtggctaatccatcatccctag---gcattaataattcagttatttggtgtcttaggtgttgctgtttgttttactattggtaatattgatctggatgt

upper sequence: GRMZM5G868913_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G01930.1 (Glycine max), 5'ss of exon 5
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCACCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGTTGTGTCTGTTCCATATCTTCGGTCTGAGgtatgatg----tccttcttctcctctgttgtttaggttaagtatggaataaccgag-gcagtaaatctttccatatctgttttcttgcttgctcacttctgact
||| || |||||||| || | |||||| |  || || |||||||| ||| ||||||| ||||||||||    ||| ||||||||||||||||| || ||||| ||  |    |||  | || |   |    | |   ||||  ||    | |    | |   ||  | || |  | | ||||||  |  |   | | |  |||  
AAGGCTTATTCCAGCACACAGCAAGGGCAAACCTCCCTCATATTATATTATTGCTGGATTTGTTTTTACAACTGTTTCTGTTCCATATCTTCGTTCCGAGgtctgtggctaatccagcatccctaattccctatgcattaataattccgttatttggtgtcttaggtgttgc--tgtttgttttactatt--gttaatattgat-

upper sequence: GRMZM5G868913_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT5G40200.1 (Arabidopsis thaliana), 5'ss of exon 5
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCACCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGTTGTGTCTGTTCCATATCTTCGGTCTGAGgtatgatgtccttcttctcctctgttgtttaggttaagtatggaataaccgaggcagtaaatctttccatatctgttttcttgcttgctcacttctgact
 || || || || ||||| || |  || |  || || || || | ||| |||||||||||||| ||||    ||| ||||||||||||||||| ||||||||    |  |  |||     ||| |  ||    |   |  |    | |   |  || | |   |||  ||| || ||| |    ||| |   || ||   
GAGGCTAATCCCTGCTCACATAAGTGGCAAACCTCCTTCGTACTTCATCGTTGCTGGCTTTGTATTTACAACTGTCTCTGTTCCATATCTTCGATCTGAGgtccttta-ctgtctctctatctttccttactttctcgctttctctcatgcatccattcacagtttatataactatttccca--ttgatatgttttgcag