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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGTCTTGGTGCTAATCAGCCAGCAGAAGTTACCATCAAGACATCTTTGGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttcatcaatagctaagcagcatttcatgttatatatcctgcctgttccaattctgatgcatattttcctcaacag

Basic information

species Zea mays
transcript GRMZM5G864414_T02
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211039487|gb|FL160242.1|FL160242
EST:     GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCG
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCG
EST: gi|211236121|gb|FL160251.1|FL160251
EST:     GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
EST: gi|211236127|gb|FL160257.1|FL160257
EST:     GGACACTTGGATCTAACGCTTAGAGNTTTGCCTTCGCATATAGGCTCTAG                         GGTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
EST: gi|211236124|gb|FL160254.1|FL160254
EST:     GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
EST: gi|211236125|gb|FL160255.1|FL160255
EST:     GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
EST: gi|211039484|gb|FL160239.1|FL160239
EST:     GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
EST: gi|14191135|gb|BG833365.1|BG833365
EST:     GGACACTTGGATCTAGCGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
EST: gi|211039492|gb|FL160247.1|FL160247
EST:     GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
EST: gi|211039485|gb|FL160240.1|FL160240
EST:     GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
EST: gi|211039488|gb|FL160243.1|FL160243
EST:     GGACACTTGGATCTAACGCTTANAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGGAAGGT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAG-T
EST: gi|211236120|gb|FL160250.1|FL160250
EST:     GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
EST: gi|211236119|gb|FL160249.1|FL160249
EST:     GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAG                         GTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT
genomic: GGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttc ... tcctcaacagGTTTGGGTTTTCGTTTTCTGCTAGCTTTCTTCTACTCTACCACTGTAAGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGTCTTGGTGCTAATCAGCCAGCAGAAGTTACCATCAAGACATCTTTGGACACTTGGATCTAACGCTTAGAGCTTTGCCTTCGCATATAGGCTCTAGgtatcctttcatcaatagctaagcagcatttcatgttatatatcctgcctgttccaattctgatgcatattttcctcaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT