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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTAACACGCTTACAGAAGCTTGGGATATGTGGTGTGATAACCTTAAATGAACCATTTGAGACTTTGGTACCATCATCTATGTATAAGGCAAGTGACATgtaagttattttcccttttcatgctgaaaaatttatgttgtttcacggatccttaattcaaagtttcattaaaccttgcatatgccaccgggaacagaactgctgacccaatctattttcaatcagaaatacgctgtgacctaaatgctcctctgctgaaatttacag

Basic information

species Zea mays
transcript GRMZM5G863550_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G863550_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g05870.2 (Oryza sativa), 5'ss of exon 4
-----------ATGTAACACGCTTACAGAAGCTTGGGATATGTGGTGTGATAACCTTAAATGAACCATTTGAGACTTTGGTACCATCATCTATGTATAAGGCAAGTGACATgtaag----ttattttccctt--ttcatgctgaaaaatttatgttgtttcacggatccttaattcaaagtttcattaaaccttgcatatgccaccgggaacagaactgctgacccaatctattttcaatcagaaatacgctgtgacctaaatgctcctctgctgaaatttacag
           ||||  | || || |||||||||||| | | |||||| |||||| | ||||||||||||||||||||||| ||||| || |||||| |||||||        |||    ||||||| |  |  ||  ||    || ||| |||   | ||  | |   | |      ||    |  |    |     |  |  | ||  ||||                                                                       
ATTCCGTAGGGATGTTCCTCGGTTGCAGAAGCTTGGGGTGTATGGTGTCATAACCCTGAATGAACCATTTGAGACTTTGGTGCCATCGTCGATGTATCAGgcaagctgttaacaagatttttatttttctctcttttgtgtaagaagattaatgccatctc-tgaaagttcagactttagcactaaaatgtttcatgaaaacttctggtgacag-----------------------------------------------------------------------

upper sequence: GRMZM5G863550_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g05870.1 (Oryza sativa), 5'ss of exon 2
-----------ATGTAACACGCTTACAGAAGCTTGGGATATGTGGTGTGATAACCTTAAATGAACCATTTGAGACTTTGGTACCATCATCTATGTATAAGGCAAG----TGACATgtaagttattttccctt--ttcatgctgaaaaatttatgttgtttcacggatccttaattcaaagtttcattaaaccttgcatatgccaccgggaacagaactgctgacccaatctattttcaatcagaaatacgctgtgacctaaatgctcctctgctgaaatttacag
           ||||  | || || |||||||||||| | | |||||| |||||| | ||||||||||||||||||||||| ||||| || |||||| |||||||    | ||| |    ||||||| |  |  ||  ||    || ||| |||   | ||  | |     | |||| | |||    |   ||   || |  ||     |                                                                           
ATTCCGTAGGGATGTTCCTCGGTTGCAGAAGCTTGGGGTGTATGGTGTCATAACCCTGAATGAACCATTTGAGACTTTGGTGCCATCGTCGATGTATCAGgcaagctgttaacaagatttttatttttctctcttttgtgtaagaagattaatgccatctc-tgaa-----agttcagacttt----agcactaaaatgtttcatgaaaa---------------------------------------------------------------------------